Gene detail

Detail information of GWHGAAZE023029

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002266306.2	0	PREDICTED: cyclin-dependent kinase G-2 isoform X1 [Vitis vinifera]
COG	YP_003846973.1	5E-23	serine/threonine protein kinase
Swissprot	tr\|Q7XUF4\|CDKG2_ORYSJ	0	Cyclin-dependent kinase G-2
trEMBL	tr\|F6HG49\|F6HG49_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51242.1}
TAIR10	AT1G67580.2	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	82251742	82256901	+
GWHAAZE00000006	mRNA	82251742	82256901	+
GWHAAZE00000006	exon	82251742	82253450	+
GWHAAZE00000006	exon	82253952	82254087	+
GWHAAZE00000006	exon	82254202	82254290	+
GWHAAZE00000006	exon	82254489	82254600	+
GWHAAZE00000006	exon	82254706	82254812	+
GWHAAZE00000006	exon	82254903	82255074	+
GWHAAZE00000006	exon	82255148	82255329	+
GWHAAZE00000006	exon	82255460	82255528	+
GWHAAZE00000006	exon	82256475	82256576	+
GWHAAZE00000006	exon	82256697	82256901	+
GWHAAZE00000006	CDS	82251742	82253450	+
GWHAAZE00000006	CDS	82253952	82254087	+
GWHAAZE00000006	CDS	82254202	82254290	+
GWHAAZE00000006	CDS	82254489	82254600	+
GWHAAZE00000006	CDS	82254706	82254812	+
GWHAAZE00000006	CDS	82254903	82255002	+
GWHAAZE00000006	three_prime_UTR	82255003	82255074	+
GWHAAZE00000006	three_prime_UTR	82255148	82255329	+
GWHAAZE00000006	three_prime_UTR	82255460	82255528	+
GWHAAZE00000006	three_prime_UTR	82256475	82256576	+
GWHAAZE00000006	three_prime_UTR	82256697	82256901	+

Transcript Sequence
>GWHTAAZE023059 ATGGCGGCAGGTAGACATGGGGGTTGCCGCGATAATGAATTCAGGGAGCGTGGGTCAGATATTGATGTGTCAAGGCGGGAACTTGCTTATCCAAAGGGAGAGTATGATCGACTTAGGAAAGGTGATCGCGATTATGACAGGAGTCGTATTAGACAGAAGGATATTAAAGAGAGGGAGTTTATGAATGGAGGTTACCGTTCTGCTTCCACTAGGAGTAACTCAGGGAGTAGTGGAAGTAGTGCCGGTGGCAGTCCAAGGAGGTCTGGATATTCAGTGAGAGTCTTAGACCGAGAGCCTGGGGAGTTGTCCAGCGAAAGTGGATCTGAGGAGGCTATTGACTCGGTATCAAGGGTTAAACACGTGGATCATTTGAAGTCTGAGAATGGAACTCAGTCACCTTTGCAAAGTAAAAAGAGGAAGTTCTCACCAATTGTTTGGGACAGAGATGACAAGGATGTGAATAATTTATCGAAAAGTAGGATGTCCCCAGCAATTACTGCTCTCCCCCCTCCACCTCCACTTCCCAAGTCTTTCCGCCGGTCACCTAACTCTATTCCAGCTGGTGGTATCCAAATATCACCCACGGAAAATACTCAAGTTTTGACCCCAGAGCCATCGTTTGCTATGCCTCCTGTGGATATCGGCCCACAGGCATCTGTTGCATCCGGGTCCCCAGTTGATTTATCTTCTTCTCTACTTCGGGAACAGCTGCCTGGAGATTACAATCCTGAAATAGAGCAGCCCAGATATGAAGATAGTGCACCTGTGCGGAATATAAGAGCATCTCGATGGGCAAATGATTCCAATTCTCCAGTTGATGAAGGTGAAATTTTGAATTTGCCGGTTGATAATAAAATGCAGAAAAGGTGGAAGAAAATGCCCCTTCCAGTCTCGGTTGAAAGGAAGAAATCACCAAGTCCTGAGCTTGGGGAGCTTAAACAAGAAGGCTCTGAACGAGCTACGGTGAGGTCGTCTGAATCTGATGAAGATGGTATCCATGTTAGGTCAGCCAGTAGAGATGATTACCTTGACAGTGATTTGGAAAAGAATGACTACATGGAGATAGATGGGGAAGACAATGATGGTACTAATGTTAGCCAGTCAGACACAGACTCCGAGGATGAACGCGATTCTCATTGTACACCAGACCCTGCAGTTTCCTCTCAAAGAAGCGTGAACATGCTTCAGGGATGTAGAAGTGTTGATGAGTTTGAGAGATTAAACAAGATAGATGAAGGCACATACGGGGTCGTTTACAGAGCTAAAGATAAGAAAACAGGGGAAATTGTTGCTCTGAAGAAGGTCAAGATGGAAAAAGAAAAAGAAGGGTTTCCTTTGACTTCTTTAAGGGAAATAAATATTCTTCTTTCATTTCATCACCCATCAATTGTGGATGTAAAAGAAGTTGTAGTGGGAAGCAGTCTTGACAGTATTTTTATGGTTATGGAATACATGGAGCATGATCTCAAGGCACTGATGGAGACAATGAAACAGCCATTTAGTCAGAGTGAAGTCAAATGCCTTATGCTCCAGCTATTGGAGGGTGTCAAGTACCTTCATGATAACTGGGTTCTTCATCGAGATCTGAAAACATCAAATCTGCTTTTAAATAATCGTGGTGAGTTGAAGATCTGTGATTTCGGGTTGGCTCGTCAATACGGGAGCCCGTTGAAACCATATACTCATTTGGTGGTCACTCTGTGGTACAGGGCACCAGAACTTTTGTTGGGAGCAAAACAATACTCAACTGCAATTGACATGTGGTCACTGGGTTGTATCATGGGGGAGCTGTTATCAAAGCAACCACTATTCAATGGGAAAACGGAGTTCGATCAGCTTGACAAGATTTTCAGAATACTTGGGACACCAAATGAGACAATTTGGCCTGGGTTTTCCAAACTTCCTGGAGTTAAGGTGAACTTCGTCAAGCATCAGTATAATTTATTGCGTAGGAAATTTCCAGCTACATCTTTTACTGGATCACCAGTTCTCTCAGATGCTGGATTTGACTTGTTGAACAAACTTCTAACCTATGACCCTGAGAAGCGGATAACAGCTGAAGCTGCCCTTGGCCATGAGTGGTTCCGCGAAGTTCCTCTTCCCAAATCCAAAGATTTCATGCCCACTTTCCCTGCTCAGCATGCACAAGACAGGCGCATGCGAAGAATAATGAAGAGTCCAGATCCTTTAGAAGAACAGCGTCGGAAGGAGTTGAAGCAAGGGGAATTAGGAACAGGAGGATTGTTTGGCTAAGACATGTACGGGGTGCTCAATCTTTTATCTCTGCGTGTAGTGTTATGTATTACTCACATTGATGTCATTGAGGGACCCTGATGATTTGGGTGAAAAGACATTCTTTCAAATTTGCCTGCCAATCAGATGTATAGCAGGTTTTCTTGTCCTCCTGATCTGCTTGTTATACAGAAACACATATGTGACACTGCTTGCATTGCAAGGTGTGGCATAACGGCCTTCCCTTCTAAGGAACTATTTCAGTTGAAACTCTTGCCGTTGGTGTAAAGCGGGGAGGGGCATTATTAGCTTTTCATTGATGAAGAAAGTATTGCGCTTTGAAGTATGAAAGCAAGCAGGTTGAGGTGGTTACCTGCAGAGCCTGGAATTTATTAATCTTTTTCTGTTGGTTCAGATACTGTTTTTGTCCTTCAGGCTCGATAGAGCAATGTGTACAAGGACCAAGGATAGACCTGGCCACCTGGGGTTTAGTTTAAGGGGGTTGAGGATTGAATAGACAACTTCTTTTAACGCGGGCAGTCAAAGATTGCATCCAACTTACCATTATTTATAGTCTTTTTGTTTTTTATGGTGCTTAATACTGATAAAGAACAATAGGGAATCTATTGAAGTTAAAATGGTTTTTTATAT

Network for GWHGAAZE023029

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	404	695	1.60E-74

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-PITSLRE

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.834
	SRR3591706	second leaf	25.559
	SRR3591707	mature leaf	25.603
	SRR3591708	Shoot apex	30.900
	SRR3591709	Stem	35.306
	SRR3591710	White floral bud	45.742
	SRR3591711	White flower	48.546
	SRR3591712	Green floral bud	31.243
	SRR3591713	Yellow flower	48.202
SRP173429	SRR8316895	Juvenile bud stage	16.573
	SRR8316896	Juvenile bud stage	20.170
	SRR8316897	Juvenile bud stage	8.803
	SRR8316894	Third green stage	10.991
	SRR8316900	Third green stage	24.657
	SRR8316901	Third green stage	24.343
	SRR8316898	Complete white stage	14.769
	SRR8316899	Complete white stage	39.848
	SRR8316903	Complete white stage	28.782
	SRR8316902	Silver flowering stage	15.898
	SRR8316904	Silver flowering stage	24.012
	SRR8316905	Silver flowering stage	12.745
	SRR8316906	Gold flowering stage	38.489
	SRR8316907	Gold flowering stage	37.068
	SRR8316908	Gold flowering stage	42.983
SRP132670	SRR6706286	Control	25.021
	SRR6706287	Light intensity 50%	26.805
	SRR6706288	Light intensity 20%	27.594
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.760
	CNS0095593	Slightly white alabastrum(diploid) 2	14.186
	CNS0095594	Slightly white alabastrum(diploid) 3	13.642
	CNS0095595	Whole white alabastrum(diploid) 2	12.894
	CNS0095596	Whole white alabastrum(diploid) 3	10.390
	CNS0095597	Whole white alabastrum(diploid) 4	12.276
	CNS0095598	Silvery flower (diploied) 1	25.468
	CNS0095599	Silvery flower (diploied) 2	17.611
	CNS0095600	Silvery flower (diploied) 3	31.763
	CNS0095601	Golden flower (diploid) 1	21.618
	CNS0095602	Golden flower (diploid) 2	31.120
	CNS0095603	Golden flower (diploid) 3	30.893
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.238
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.804
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.014
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.630
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.746
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.301
	CNS0095610	Silvery flower (diploied) 1	38.689
	CNS0095611	Silvery flower (diploied) 2	32.805
	CNS0095612	Silvery flower (diploied) 3	42.482
	CNS0095613	Golden flower (tetraploid) 1	27.457
	CNS0095614	Golden flower (tetraploid) 2	36.399
	CNS0095615	Golden flower (tetraploid) 3	48.610
CRA001975	CRR073297	Stem 1	25.360
	CRR073298	Stem 2	25.431
	CRR073299	Stem 3	19.832
	CRR073300	Leaf 1	28.193
	CRR073301	Leaf 2	26.659
	CRR073302	Leaf 3	17.121
	CRR073303	Juvenile bud 1	18.608
	CRR073304	Juvenile bud 2	15.592
	CRR073305	Juvenile bud 3	24.498
	CRR073306	Third green 1	12.092
	CRR073307	Third green 2	9.763
	CRR073308	Third green 3	15.512
	CRR073309	Second white 1	13.444
	CRR073310	Second white 2	16.919
	CRR073311	Second white 3	20.008
	CRR073312	Silver flowering 1	14.106
	CRR073313	Silver flowering 2	12.066
	CRR073314	Silver flowering 3	12.012
	CRR073315	Gold flowering 1	11.540
	CRR073316	Gold flowering 2	15.087
	CRR073317	Gold flowering 3	10.755
	CRR073318	Tawny withering 1	20.928
	CRR073319	Tawny withering 2	18.816
	CRR073320	Tawny withering 3	17.917