Gene detail

Detail information of GWHGAAZE023110

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010657242.1	0	PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD3 [Vitis vinifera]
COG	YP_004281685.1	5E-10	ankyrin
Swissprot	tr\|Q5W7F2\|AGD3_ARATH	0	ADP-ribosylation factor GTPase-activating protein AGD3
trEMBL	tr\|D7TFH8\|D7TFH8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI29251.3}
TAIR10	AT5G13300.1	0	ARF GTPase-activating protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	83748890	83763455	-
GWHAAZE00000006	mRNA	83748890	83763455	-
GWHAAZE00000006	exon	83763431	83763455	-
GWHAAZE00000006	exon	83762829	83762911	-
GWHAAZE00000006	exon	83761338	83761414	-
GWHAAZE00000006	exon	83760593	83760693	-
GWHAAZE00000006	exon	83760050	83760120	-
GWHAAZE00000006	exon	83759623	83759685	-
GWHAAZE00000006	exon	83758747	83758791	-
GWHAAZE00000006	exon	83757780	83757845	-
GWHAAZE00000006	exon	83757623	83757670	-
GWHAAZE00000006	exon	83757409	83757504	-
GWHAAZE00000006	exon	83757293	83757334	-
GWHAAZE00000006	exon	83752538	83752753	-
GWHAAZE00000006	exon	83752269	83752400	-
GWHAAZE00000006	exon	83751902	83752126	-
GWHAAZE00000006	exon	83751694	83751780	-
GWHAAZE00000006	exon	83751263	83751598	-
GWHAAZE00000006	exon	83750855	83751000	-
GWHAAZE00000006	exon	83750623	83750716	-
GWHAAZE00000006	exon	83749632	83750116	-
GWHAAZE00000006	exon	83749373	83749486	-
GWHAAZE00000006	exon	83749116	83749235	-
GWHAAZE00000006	exon	83748890	83748944	-
GWHAAZE00000006	CDS	83763431	83763455	-
GWHAAZE00000006	CDS	83762829	83762911	-
GWHAAZE00000006	CDS	83761338	83761414	-
GWHAAZE00000006	CDS	83760593	83760693	-
GWHAAZE00000006	CDS	83760050	83760120	-
GWHAAZE00000006	CDS	83759623	83759685	-
GWHAAZE00000006	CDS	83758747	83758791	-
GWHAAZE00000006	CDS	83757780	83757845	-
GWHAAZE00000006	CDS	83757623	83757670	-
GWHAAZE00000006	CDS	83757409	83757504	-
GWHAAZE00000006	CDS	83757293	83757334	-
GWHAAZE00000006	CDS	83752538	83752753	-
GWHAAZE00000006	CDS	83752269	83752400	-
GWHAAZE00000006	CDS	83751902	83752126	-
GWHAAZE00000006	CDS	83751694	83751780	-
GWHAAZE00000006	CDS	83751263	83751598	-
GWHAAZE00000006	CDS	83750855	83751000	-
GWHAAZE00000006	CDS	83750623	83750716	-
GWHAAZE00000006	CDS	83749632	83750116	-
GWHAAZE00000006	CDS	83749373	83749486	-
GWHAAZE00000006	CDS	83749116	83749235	-
GWHAAZE00000006	CDS	83748890	83748944	-

Transcript Sequence
>GWHTAAZE023140 ATGAAATCGTCGTCGTCGTGGTCTGACATCAACAGGAGGAGGAGACCAATCTCTGTTACCAACATGCATTTCTCCAAGCTAGATGACTCCCCTATGTTTCGTAAACAGATACAGTGCTTGGAGGAGAGTGCTGAATCATTGAGGGAGAGAAGTTTAAAGTTTTACAAAGGATGCCGAAAATACACGGAAGGCCTTGGAGAGGGCTATGACGGGGACATCGCTTTTGCTAGTGCCCTAGAAACTTTTGGTGGTGGGCACAATGATCCCATTAGTGTTGCTTTTGGAGGTCCTGTTATGACGAAATTCACTATTGCTTTGAGGGAGATTGGGACGTACAAGGAAGTTCTTCGATCTCAGGTTGAGCACATGCTAAATGACCGTCTACTGCAATTTGTCAATATAGATTTGCATGATGTGAAGGAAGCAAGGAAGCGTTTTGACAAGGCTAGTCTTCTTTATGACCAGGCACGCGAGAAGTTTCTGTCACTGAGGAAAGGCACAAAGAGTGATATAGCTACTGTTGTTGAGGAGGAGCTTCATAATGCAAGGTCTATTTTTGAGCAAGCTCGCTTCAATCTGGTAACTGCCCTTTCCAATGTTGAAGCAAAAAAGAGGTTTGAATTCTTGGAAGCAGTTAGTGGTACTATGGACGCTCATCTTCGTTACTTCAAGCAGGGCTATGAGCTATTGCATCAAATGGAGCCATATATCAATCAGGTTTTGACTTATGCACAACAGTCGAGGGAAAGATCAAATTATGAGCATGCAGCTCTCAATGAAAGGATGCAAGAGTACAAAAGGCAGATAGATCGAGAGAGCAGGTTATCTTCAAATGGTTGTAATGGATCTCCAAATGGAGACGGCATACAAGCCATTGGTAGAAGTTCACATAAAATGATAGAGGCAGTCATGCAATCTGCTACAAAGGGAAAGGTTCAAACCATTCGACAAGGTTATCTTTCAAAACGTTCATCAAACTTGAGAGGTGACTGGAAGAGAAGGTTTTTTGTTCTTGATAGCCGAGGGATGTTGTACTATTATCGAAAACAAAGCAACAAACCATCTGGTTCTGGCAGTCAACTTTCTGGTCAGAGAAATAGTTCTGAACTTGGTTCTGGACTGCTGAGTCGGTGGCTTTCTTCTCATTACCATGGTGGTGTACATGATGAGAAATCTGTTGCTCATCACACTGTGAACCTGTTGACATCAACAATAAAGGTTGATGCTGATCAGTCAGACCTGAGATTTTGCTTCAGGATTATTTCTCCAACAAAGAACTATACCTTGCAGGCGGAGAGTGCCCTGGACCAAATGGATTGGATTGAGAAGATAACAGGGGTTATTGCTTCTTTACTCAGTTCTCAGACTCCTGAGAGGTGCTTGGTTGGTAGTCCCATGGGTGTTAGTCACCATCGATCTGCCAGCGAGAGTAGCTCATTTGAAAGTTCTGATTTCGATCATACAGCAGTGGAGGATTATACATCTGAGAGGCTTGCCTCCGCACATCATGAACGGCTATCAAGAATTTCACATCATCAAAGGCCTGGCGCAAAAAGTGAGAAGCCGATTGACATACTTCGAAGAGTATGTGGAAATGATAAATGTGCTGATTGTGGTGCTCCAGAACCTGATTGGGCATCCTTAAATCTAGGAGTTCTTGTCTGCATTGAATGTTCTGGTGTTCACCGTAATCTTGGTGTGCATATATCAAAGGTAAGGTCACTGACTCTTGATGTTAAAGTGTGGGAGCCTTCTGTTATAACATTGTTTCAGTCTTTGGGCAATACCTTTGCTAATTCAGTCTGGGAGGAAACACTGCAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCTCAACAGGCTTGTACAAGTCTGATAAACTGCAGTTGCTATACATCAGCAAGCCTAGTCATGCTGATTCCATTTCAGTAAAGGAGAAGTTCATTCATGCAAAGTACGCAGACAAATTCTTTGTTCGGAAGCCCAAGGACCATCACTTGGTGGCTCAGCAGATATGGGAAGCTGTTCGTGCCAATGACAAGAAAGCTGTATACCGCCTTATTGTAAACTCTGAAGCAGATGTAAATGCTGTCTCTGAGCAAGTGTCTTGTAGTTCTTTAACCCTTGCCAAGGTAATGATGTTGCAAGAGCAGACAAGCGTTGATCATCATAACTCCGGTTGCTTAATTCGGGATTCATCAGGAAAGTCCTCTTCGAGCTCTTCAAATGTTGCAACAAATACAAGTGACATCCATAGCTTGGTCGACCTTGATGGGTGCACCCTGCTTCACCTGGCATGTGAAACTGCAGACATTGGCATGCTCGAGCTCCTCCTACAGTATGGCGCTAACGTAAATGTTTCAGATTCAAGAGGTCAGATGCCACTCCACCGTTGTCTTCTCAGACGCAAAGCTACACTTGCCAAGCTGCTTCTTACACGGGGGGCTGATCCACAGGCTTTAAATGGGGAAGGTAAAACCCCTTTGGAGCTAGCGTTGGAGTCAAATTTGGAGGACAGTGAGGTCCTTGCTCTGTTATCGGACTCAAATGGATACGATCGTACATTGAAGGGTCCTGAAGGATATCATCTGCCTGTAAGCGGCCGTTCAAGTTGGATATCTGATTGTAAGTTAAACTGCCCTAATGCTTTGGAGGTGGAAGCCTTGGACCTACGGAAAGGTAGCCCTTGCCACATTACAATGACTTGTCAAACGGCTGCTACTTATGCT

Network for GWHGAAZE023110

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16746.6	BAR_3	27	255	2.50E-39
PF00169.30	PH	315	448	8.00E-12
PF01412.19	ArfGap	523	660	1.30E-33
PF12796.8	Ank_2	762	852	1.40E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12489	ACAP	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005737	cellular_component	cytoplasm
GO:0005515	molecular_function	protein binding
GO:0005096	molecular_function	GTPase activator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	57.218
	SRR3591706	second leaf	32.551
	SRR3591707	mature leaf	30.017
	SRR3591708	Shoot apex	57.926
	SRR3591709	Stem	54.570
	SRR3591710	White floral bud	32.413
	SRR3591711	White flower	35.900
	SRR3591712	Green floral bud	38.830
	SRR3591713	Yellow flower	30.730
SRP173429	SRR8316895	Juvenile bud stage	21.018
	SRR8316896	Juvenile bud stage	26.742
	SRR8316897	Juvenile bud stage	12.847
	SRR8316894	Third green stage	12.583
	SRR8316900	Third green stage	30.012
	SRR8316901	Third green stage	25.833
	SRR8316898	Complete white stage	8.163
	SRR8316899	Complete white stage	40.412
	SRR8316903	Complete white stage	15.066
	SRR8316902	Silver flowering stage	6.489
	SRR8316904	Silver flowering stage	10.916
	SRR8316905	Silver flowering stage	5.012
	SRR8316906	Gold flowering stage	16.084
	SRR8316907	Gold flowering stage	14.454
	SRR8316908	Gold flowering stage	19.627
SRP132670	SRR6706286	Control	19.973
	SRR6706287	Light intensity 50%	21.596
	SRR6706288	Light intensity 20%	24.337
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.649
	CNS0095593	Slightly white alabastrum(diploid) 2	18.392
	CNS0095594	Slightly white alabastrum(diploid) 3	13.257
	CNS0095595	Whole white alabastrum(diploid) 2	14.132
	CNS0095596	Whole white alabastrum(diploid) 3	12.471
	CNS0095597	Whole white alabastrum(diploid) 4	13.865
	CNS0095598	Silvery flower (diploied) 1	23.204
	CNS0095599	Silvery flower (diploied) 2	19.906
	CNS0095600	Silvery flower (diploied) 3	23.579
	CNS0095601	Golden flower (diploid) 1	15.504
	CNS0095602	Golden flower (diploid) 2	24.179
	CNS0095603	Golden flower (diploid) 3	22.429
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.089
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.610
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.573
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.027
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.637
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.298
	CNS0095610	Silvery flower (diploied) 1	21.111
	CNS0095611	Silvery flower (diploied) 2	26.629
	CNS0095612	Silvery flower (diploied) 3	17.424
	CNS0095613	Golden flower (tetraploid) 1	8.886
	CNS0095614	Golden flower (tetraploid) 2	18.075
	CNS0095615	Golden flower (tetraploid) 3	8.783
CRA001975	CRR073297	Stem 1	38.451
	CRR073298	Stem 2	34.575
	CRR073299	Stem 3	38.450
	CRR073300	Leaf 1	40.668
	CRR073301	Leaf 2	33.538
	CRR073302	Leaf 3	34.723
	CRR073303	Juvenile bud 1	38.961
	CRR073304	Juvenile bud 2	21.121
	CRR073305	Juvenile bud 3	54.317
	CRR073306	Third green 1	5.609
	CRR073307	Third green 2	7.252
	CRR073308	Third green 3	8.935
	CRR073309	Second white 1	12.340
	CRR073310	Second white 2	8.294
	CRR073311	Second white 3	10.332
	CRR073312	Silver flowering 1	7.054
	CRR073313	Silver flowering 2	6.822
	CRR073314	Silver flowering 3	5.225
	CRR073315	Gold flowering 1	18.509
	CRR073316	Gold flowering 2	29.794
	CRR073317	Gold flowering 3	23.168
	CRR073318	Tawny withering 1	41.560
	CRR073319	Tawny withering 2	31.448
	CRR073320	Tawny withering 3	45.753