Gene detail

Detail information of GWHGAAZE023158

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011021168.1	0	PREDICTED: tryptophan synthase beta chain 1 [Populus euphratica]
COG	YP_005535112.1	0	tryptophan synthase subunit beta
Swissprot	tr\|P25269\|TRBP2_ARATH	8E-29	Tryptophan synthase beta chain 2, chloroplastic (Precursor)
trEMBL	tr\|U5FMX8\|U5FMX8_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:ERP51286.1}
TAIR10	AT5G38530.1	0	tryptophan synthase beta type 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	852903	857255	+
GWHAAZE00000007	mRNA	852903	857255	+
GWHAAZE00000007	exon	852903	852957	+
GWHAAZE00000007	exon	854308	854680	+
GWHAAZE00000007	exon	854774	854990	+
GWHAAZE00000007	exon	855684	856221	+
GWHAAZE00000007	exon	856303	856401	+
GWHAAZE00000007	exon	856993	857255	+
GWHAAZE00000007	CDS	852903	852957	+
GWHAAZE00000007	CDS	854308	854680	+
GWHAAZE00000007	CDS	854774	854990	+
GWHAAZE00000007	CDS	855684	856221	+
GWHAAZE00000007	CDS	856303	856401	+
GWHAAZE00000007	CDS	856993	857255	+

Transcript Sequence
>GWHTAAZE023188 ATGGCAAATTCTCTTTTTCTTACCACAAACGCACTCCAAAACAGTTTTCTCAGAGTGCATTGGCTTATTATCACTAAAACTGTCTGTTGCACAGGCGACGAGCAATGGCTTGGTTGCTATGAATGGAAAACAAAGCCTAGCTACCTGAAACTTCCTTATGGCTCTAGAACAAGGACAGTAGTAGCTCTTAGCGCCAACTCTAACTCAACTGCACTACCTCGTCAATGGTACAATCTAATAGCAGATCTTCCAATCAAACCTCCTCCATCTTTGCATCCAAAGACTCAAAAACCAGTCAAACCCGAGGATTTATCTCCTCTTTTTCCTGATGAGTTAATTAAGCAAGAGGCTAGCAATGAACGCTTCATTGATATCCCAGAAGAGGTTCTAGATGTTTACAGTCTTTGGCGCCCAACCCCTCTGATCAGAGCCAAGAGGTTGGAGAAACTACTCAATACACCTGCAAGGATATACTACAAGTACGAAGGTGTAAGCCCAGCTGGCTCCCACAAGCCCAACACTGCTGTCCCTCAGGTCTGGTATAATGCACAAGAAGGTGTCAAGAATGTCGTGACGGAAACTGGTGCTGGCCAATGGGGGAGTTCTCTGGCTTTTGCATGCAGCTTATTTAATGTCAACTGCGAAGTATGGCAAGTCCGGGCATCTTATGATCAGAAACCATATCGTAGAATGATGATGGAAACCTGGGGTGCCAAAGTTTACCCTTCTCCTTCTTCTGTTACTGAGTCGGGCCGGAGAATTCTTCAAATGGATCCATCAAGCCCAGGAAGTTTAGGAATTGCTATATCCGAGGCTGTGGAGGTTGCTGCCTCAAATGCCGATACCAAATACTGTCTAGGGAGTGTTCTTAACCATGTTTTGTTACATCAGACTATCATAGGAGAAGAGTGTATAAAGCAGATGGAACTCATAGGGGAGACTCCTGATGTGATAATTGGATGTACTGGGGCCGGGTCAAATTTTGGCGGGCTTGCTTTTCCATTTATTCGAGAAAAGCTTAATGGGAAAATTAATCCTCTCATAAGGGCGGTTGAACCTACAGCTTGCCCTTCGTTAACTAAAGGTGTATACAAGTATGATTATGGAGATACTGCAGGGATGACGCCTTTGATGAAAATGCATACACTTGGGCATGACTTCATTCCTGACCCAATTCATGCTGGGGGTTTGCGTTACCATGGCATGTCGCCGTTGATTTCACATATTTACGAATTGGGTTTCATGGAAGCATTGGCAATTCCTCAGATTGAATGTTTTCGAGGTGCCATACAATTTGCAAGGTCCGAGGGACTAATACCAGCACCAGAACCAACTCATGCCATAGCTGCCACCATTAGGGAAGCTCTCCACTGCAAAGAAACCGGAGAATCAAAAGTTATACTAATGGCAATGTGTGGCCATGGCCATTTCGACCTACCAGCTTACGAGAAGTATTTGCAGGGAAATATGGTCGATTTGTCATTCTCAGAGGCAAAGATGCAATCATCAATGGCCAATATTCCCCAAATGGTACCTTCCGAGTGA

Network for GWHGAAZE023158

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00291.26	PALP	135	473	6.40E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06001	trpB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Glycine, serine and threonine metabolism	map00260
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name
GO:0006568	biological_process	tryptophan metabolic process
GO:0000162	biological_process	tryptophan biosynthetic process
GO:0004834	molecular_function	tryptophan synthase activity
GO:0030170	molecular_function	pyridoxal phosphate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.752
	SRR3591706	second leaf	11.041
	SRR3591707	mature leaf	11.893
	SRR3591708	Shoot apex	7.827
	SRR3591709	Stem	6.724
	SRR3591710	White floral bud	27.637
	SRR3591711	White flower	35.034
	SRR3591712	Green floral bud	16.852
	SRR3591713	Yellow flower	26.124
SRP173429	SRR8316895	Juvenile bud stage	7.624
	SRR8316896	Juvenile bud stage	8.899
	SRR8316897	Juvenile bud stage	6.484
	SRR8316894	Third green stage	5.941
	SRR8316900	Third green stage	22.521
	SRR8316901	Third green stage	19.768
	SRR8316898	Complete white stage	8.252
	SRR8316899	Complete white stage	18.657
	SRR8316903	Complete white stage	15.373
	SRR8316902	Silver flowering stage	5.284
	SRR8316904	Silver flowering stage	6.297
	SRR8316905	Silver flowering stage	3.209
	SRR8316906	Gold flowering stage	11.897
	SRR8316907	Gold flowering stage	11.084
	SRR8316908	Gold flowering stage	12.666
SRP132670	SRR6706286	Control	18.064
	SRR6706287	Light intensity 50%	19.907
	SRR6706288	Light intensity 20%	18.926
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.626
	CNS0095593	Slightly white alabastrum(diploid) 2	10.983
	CNS0095594	Slightly white alabastrum(diploid) 3	6.541
	CNS0095595	Whole white alabastrum(diploid) 2	10.555
	CNS0095596	Whole white alabastrum(diploid) 3	8.762
	CNS0095597	Whole white alabastrum(diploid) 4	6.545
	CNS0095598	Silvery flower (diploied) 1	16.325
	CNS0095599	Silvery flower (diploied) 2	13.127
	CNS0095600	Silvery flower (diploied) 3	23.130
	CNS0095601	Golden flower (diploid) 1	14.070
	CNS0095602	Golden flower (diploid) 2	17.573
	CNS0095603	Golden flower (diploid) 3	16.936
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.876
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.038
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.930
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.923
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.866
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.356
	CNS0095610	Silvery flower (diploied) 1	26.495
	CNS0095611	Silvery flower (diploied) 2	26.843
	CNS0095612	Silvery flower (diploied) 3	20.849
	CNS0095613	Golden flower (tetraploid) 1	7.936
	CNS0095614	Golden flower (tetraploid) 2	23.872
	CNS0095615	Golden flower (tetraploid) 3	6.086
CRA001975	CRR073297	Stem 1	13.279
	CRR073298	Stem 2	11.875
	CRR073299	Stem 3	13.206
	CRR073300	Leaf 1	19.323
	CRR073301	Leaf 2	15.207
	CRR073302	Leaf 3	21.186
	CRR073303	Juvenile bud 1	23.022
	CRR073304	Juvenile bud 2	33.795
	CRR073305	Juvenile bud 3	19.421
	CRR073306	Third green 1	14.870
	CRR073307	Third green 2	8.901
	CRR073308	Third green 3	11.023
	CRR073309	Second white 1	13.245
	CRR073310	Second white 2	6.180
	CRR073311	Second white 3	4.957
	CRR073312	Silver flowering 1	4.910
	CRR073313	Silver flowering 2	7.473
	CRR073314	Silver flowering 3	5.632
	CRR073315	Gold flowering 1	8.886
	CRR073316	Gold flowering 2	8.680
	CRR073317	Gold flowering 3	11.325
	CRR073318	Tawny withering 1	7.499
	CRR073319	Tawny withering 2	9.131
	CRR073320	Tawny withering 3	4.904