Gene detail

Detail information of GWHGAAZE023166

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010097824.1	3.7381E-116	hypothetical protein L484_009130 [Morus notabilis]
trEMBL	tr\|W9RU36\|W9RU36_9ROSA	1E-116	Uncharacterized protein {ECO:0000313\|EMBL:EXB72247.1}
TAIR10	AT3G02420.1	3E-83	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	915153	918898	+
GWHAAZE00000007	mRNA	915153	918898	+
GWHAAZE00000007	exon	915153	915188	+
GWHAAZE00000007	exon	915323	915440	+
GWHAAZE00000007	exon	915610	915710	+
GWHAAZE00000007	exon	916608	916733	+
GWHAAZE00000007	exon	916835	916955	+
GWHAAZE00000007	exon	917071	917155	+
GWHAAZE00000007	exon	918076	918193	+
GWHAAZE00000007	exon	918315	918354	+
GWHAAZE00000007	exon	918738	918898	+
GWHAAZE00000007	CDS	915153	915188	+
GWHAAZE00000007	CDS	915323	915440	+
GWHAAZE00000007	CDS	915610	915710	+
GWHAAZE00000007	CDS	916608	916733	+
GWHAAZE00000007	CDS	916835	916955	+
GWHAAZE00000007	CDS	917071	917155	+
GWHAAZE00000007	CDS	918076	918193	+
GWHAAZE00000007	CDS	918315	918354	+
GWHAAZE00000007	CDS	918738	918898	+

Transcript Sequence
>GWHTAAZE023196 ATGGATGTGGAATCTCTTTATAATTTGTTGATTCTGGATCCTGATCTTATTGTGGAGACAATGTCTACAAACAGTTCGTCTCAGCCTGCAAGACCGTCAGCACCACCACCATCATCATCAACTAGAAATGACCCAACGAGACTACGTCATTCAGGGTCAGCTAATAGATCATCAGGGACATCTGCTGCTCCGGCTACAAATCCGACTTCTCTGCGTTGGGATCGACAAACCATACAATTTTCTGTTAATGCTTGGGTCTTTGTTGTGGCTGTGCTCGCAATCTTTCCGCTTATACCTAAAAATCTATCAAATAGGGCATATCGACTTTCCTTTATGGGCACTGCATGTTCTTGTCTCTACTCTTTGTACTCATTATATGGGAAACCTAGGGCATGGAATTTGCAGGCTGTGCAAGTGTGGTTTCAGTCAATAATTGCAACCAAGGATTTTATCTACTTCATTTACTGCCTTACTTTTGTCACTTCACATCTTTCCCTTAAATTTGCCTTGATTCCCATTTTGTGCAGAGCTCTTGAACTTGTCGCGAAGTTCCTTCGACGCAATTTCAGTCGTTCCTCCTTGTACAGGAAGTACTTGGAAGAGCCTTGTGTATGGGTGGAGTCAAACACATCCACCCTCAGCATACTGTCATCACAAGCCGAGATTGGACTTGGATTTCTCCTTGTTATTTCTCTTTTCTCGTCAGTGGCAGCGAAATATAATTCAAACGTTCATGTATTGGCAGTTGTTGAAGCTAATGTATCACGCTCCCGTAACTGCTGGTTATCATCTAAGTGTATGGGCGAAGATTGGGAGGACGGTTACTCCGCTGGTCCATCGTTATGCACCATTCTTGAACTCTCCAATTGCAGCCGTGCAGAGATGGTGGTTACGCTAAAATCTTAA

Network for GWHGAAZE023166

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0288	Protein Kinases CMGC_GSK family Protein Kinases CMGC_GSK GO:0004818 glutamate-tRNA ligase activity GOslim:molecular_function GO:0006424 glutamyl-tRNA aminoacylation GOslim:biological_process GO:0043039 tRNA aminoacylation GOslim:biological_process GO:0005737 cytoplasm GOslim:cellular_component GO:0006418 tRNA aminoacylation for protein translation GOslim:biological_process GO:0009058 biosynthetic process GOslim:biological_process GO:0030170 pyridoxal phosphate binding GOslim:molecular_function GO:0004812 aminoacyl-tRNA ligase activity GOslim:molecular_function

Module ID

Function Annotation

CFinderModule0288

Protein Kinases CMGC_GSK family Protein Kinases CMGC_GSK
GO:0004818 glutamate-tRNA ligase activity GOslim:molecular_function
GO:0006424 glutamyl-tRNA aminoacylation GOslim:biological_process
GO:0043039 tRNA aminoacylation GOslim:biological_process
GO:0005737 cytoplasm GOslim:cellular_component
GO:0006418 tRNA aminoacylation for protein translation GOslim:biological_process
GO:0009058 biosynthetic process GOslim:biological_process
GO:0030170 pyridoxal phosphate binding GOslim:molecular_function
GO:0004812 aminoacyl-tRNA ligase activity GOslim:molecular_function

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03661.14	TMEM33_Pom33	76	235	1.10E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.276
	SRR3591706	second leaf	25.258
	SRR3591707	mature leaf	29.207
	SRR3591708	Shoot apex	28.847
	SRR3591709	Stem	37.131
	SRR3591710	White floral bud	40.964
	SRR3591711	White flower	46.796
	SRR3591712	Green floral bud	37.514
	SRR3591713	Yellow flower	35.140
SRP173429	SRR8316895	Juvenile bud stage	30.998
	SRR8316896	Juvenile bud stage	40.752
	SRR8316897	Juvenile bud stage	24.045
	SRR8316894	Third green stage	14.669
	SRR8316900	Third green stage	46.272
	SRR8316901	Third green stage	42.816
	SRR8316898	Complete white stage	21.203
	SRR8316899	Complete white stage	75.895
	SRR8316903	Complete white stage	34.147
	SRR8316902	Silver flowering stage	21.735
	SRR8316904	Silver flowering stage	31.091
	SRR8316905	Silver flowering stage	13.214
	SRR8316906	Gold flowering stage	43.517
	SRR8316907	Gold flowering stage	40.681
	SRR8316908	Gold flowering stage	53.723
SRP132670	SRR6706286	Control	49.879
	SRR6706287	Light intensity 50%	48.763
	SRR6706288	Light intensity 20%	53.666
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.010
	CNS0095593	Slightly white alabastrum(diploid) 2	34.518
	CNS0095594	Slightly white alabastrum(diploid) 3	27.856
	CNS0095595	Whole white alabastrum(diploid) 2	27.053
	CNS0095596	Whole white alabastrum(diploid) 3	22.859
	CNS0095597	Whole white alabastrum(diploid) 4	25.126
	CNS0095598	Silvery flower (diploied) 1	35.127
	CNS0095599	Silvery flower (diploied) 2	35.230
	CNS0095600	Silvery flower (diploied) 3	46.961
	CNS0095601	Golden flower (diploid) 1	33.329
	CNS0095602	Golden flower (diploid) 2	48.568
	CNS0095603	Golden flower (diploid) 3	44.863
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.985
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.878
	CNS0095606	Slightly white alabastrum(tetraploid) 3	50.440
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.431
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.860
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.631
	CNS0095610	Silvery flower (diploied) 1	52.361
	CNS0095611	Silvery flower (diploied) 2	55.689
	CNS0095612	Silvery flower (diploied) 3	43.513
	CNS0095613	Golden flower (tetraploid) 1	30.055
	CNS0095614	Golden flower (tetraploid) 2	38.204
	CNS0095615	Golden flower (tetraploid) 3	33.388
CRA001975	CRR073297	Stem 1	49.095
	CRR073298	Stem 2	47.954
	CRR073299	Stem 3	54.813
	CRR073300	Leaf 1	46.324
	CRR073301	Leaf 2	50.548
	CRR073302	Leaf 3	48.020
	CRR073303	Juvenile bud 1	48.813
	CRR073304	Juvenile bud 2	46.900
	CRR073305	Juvenile bud 3	54.880
	CRR073306	Third green 1	20.450
	CRR073307	Third green 2	25.940
	CRR073308	Third green 3	25.281
	CRR073309	Second white 1	31.671
	CRR073310	Second white 2	26.005
	CRR073311	Second white 3	23.082
	CRR073312	Silver flowering 1	18.198
	CRR073313	Silver flowering 2	20.808
	CRR073314	Silver flowering 3	18.715
	CRR073315	Gold flowering 1	44.946
	CRR073316	Gold flowering 2	44.772
	CRR073317	Gold flowering 3	43.905
	CRR073318	Tawny withering 1	48.216
	CRR073319	Tawny withering 2	53.738
	CRR073320	Tawny withering 3	47.459