Gene detail

Detail information of GWHGAAZE023209

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656670.1	5.22636E-65	PREDICTED: B3 domain-containing transcription factor VRN1-like [Vitis vinifera]
Swissprot	tr\|Q8L3W1\|VRN1_ARATH	3E-26	B3 domain-containing transcription factor VRN1
trEMBL	tr\|A5BRG5\|A5BRG5_VITVI	3E-60	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN65918.1}
TAIR10	AT3G18990.1	2E-23	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	1694368	1695784	-
GWHAAZE00000007	mRNA	1694368	1695784	-
GWHAAZE00000007	exon	1694368	1694637	-
GWHAAZE00000007	exon	1694762	1694919	-
GWHAAZE00000007	exon	1695028	1695346	-
GWHAAZE00000007	exon	1695650	1695784	-
GWHAAZE00000007	CDS	1695650	1695784	-
GWHAAZE00000007	CDS	1695028	1695346	-
GWHAAZE00000007	CDS	1694762	1694919	-
GWHAAZE00000007	CDS	1694368	1694637	-

Transcript Sequence
>GWHTAAZE023239 ATGACTAGCAATATTACGACTTGCAGTCGGAGCAACCACGATTGCTCGGAGTTGGACCGGTTTACTTTACCGGAGGTGGTGACACCACATTTCTTCAAGTTTATTCACCCTCTTGTTCTCCAAGATGGAAGACTGAGAATTCCTAAAAAGTTCATTGGAAAGTACGGCGAGGATCTGTCGGACCATGTCTTCCTGAAGGTTCCAGATGGAAATTTATGGAAGGTAGAGTTGGAAAAATCGAGTGGGGAGGTTTGGCTAAAGAATGGCTGGAAGGAATTTGCTGAGCACTACTCTGTAGATTTCTGGAACTTTTTAGTGTTCAGATATGGAGGGAATTCGCATTTCCATGTAATTATATTCGATATGTCTGCTTCCGAAATTGAATATCCTCTACCACCACCACCTACAACCACCCAAAATGAACGGAACATTGTTACTGTCGATCTCCTTGATGGTGGAAGTAGTGGATCTATTCTTCCAGCAAAGAGAAAACAAATGGCGAGTGAGGCTGAAAAAGAAAGAGCTCTTCAATCAGCTAAAGCTTTCACCTCTAAAAACCCTTTCTTCATGGTTATAGTGCGACCATCTTATGTTAATGCCAAATCTGGCGTGAATATACCACAGGTCTTCGCAACCAGATATTTCACAAAGGAGAATGAGAATGATAATAAAGTTACACTCCAAGTGGCGGATGGGATGAAAGTTTGGTCGGTCACATGCATTCTTGGGACAAACTATGCCAGGCTCTCTAGAGGGTGGGTATTCTTTGCGCGAGATAATTGTCTGCAAGAGGGTGATGTTTGCGTCTTTGAGGTGATAAATAAGGTTAAAAATTTGTGTAATGTTGTCATATTTCGAGCTGTAGAAGCTGTAAATTGCTAG

Network for GWHGAAZE023209

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	33	121	3.30E-15
PF02362.22	B3	189	287	2.00E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.001
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.033
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.897
SRP173429	SRR8316895	Juvenile bud stage	0.154
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.038
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.050
	SRR8316898	Complete white stage	0.489
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.950
	SRR8316902	Silver flowering stage	0.328
	SRR8316904	Silver flowering stage	0.840
	SRR8316905	Silver flowering stage	0.188
	SRR8316906	Gold flowering stage	3.784
	SRR8316907	Gold flowering stage	2.099
	SRR8316908	Gold flowering stage	0.952
SRP132670	SRR6706286	Control	0.029
	SRR6706287	Light intensity 50%	0.029
	SRR6706288	Light intensity 20%	0.058
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.147
	CNS0095599	Silvery flower (diploied) 2	0.346
	CNS0095600	Silvery flower (diploied) 3	0.370
	CNS0095601	Golden flower (diploid) 1	0.290
	CNS0095602	Golden flower (diploid) 2	1.140
	CNS0095603	Golden flower (diploid) 3	0.958
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.024
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.112
	CNS0095613	Golden flower (tetraploid) 1	0.222
	CNS0095614	Golden flower (tetraploid) 2	0.076
	CNS0095615	Golden flower (tetraploid) 3	0.009
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.130
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.549
	CRR073307	Third green 2	0.117
	CRR073308	Third green 3	0.203
	CRR073309	Second white 1	0.131
	CRR073310	Second white 2	0.488
	CRR073311	Second white 3	0.315
	CRR073312	Silver flowering 1	1.016
	CRR073313	Silver flowering 2	1.094
	CRR073314	Silver flowering 3	0.486
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.399
	CRR073320	Tawny withering 3	0.000