Gene detail

Detail information of GWHGAAZE023328

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002263088.1	0	PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Vitis vinifera]
COG	YP_004284573.1	2E-28	putative serine/threonine protein kinase
Swissprot	tr\|Q9CAD5\|YODA_ARATH	1E-108	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|D7T5R9\|D7T5R9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI25853.3}
TAIR10	AT5G66850.1	3E-158	mitogen-activated protein kinase kinase kinase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	5455044	5460722	+
GWHAAZE00000007	mRNA	5455044	5460722	+
GWHAAZE00000007	exon	5455044	5455172	+
GWHAAZE00000007	exon	5455389	5455713	+
GWHAAZE00000007	exon	5456245	5456263	+
GWHAAZE00000007	exon	5456504	5457202	+
GWHAAZE00000007	exon	5457281	5457368	+
GWHAAZE00000007	exon	5458042	5458104	+
GWHAAZE00000007	exon	5458203	5458366	+
GWHAAZE00000007	exon	5458548	5458623	+
GWHAAZE00000007	exon	5458980	5459039	+
GWHAAZE00000007	exon	5459121	5459246	+
GWHAAZE00000007	exon	5459880	5460089	+
GWHAAZE00000007	exon	5460306	5460397	+
GWHAAZE00000007	exon	5460566	5460722	+
GWHAAZE00000007	five_prime_UTR	5455044	5455115	+
GWHAAZE00000007	CDS	5455116	5455172	+
GWHAAZE00000007	CDS	5455389	5455713	+
GWHAAZE00000007	CDS	5456245	5456263	+
GWHAAZE00000007	CDS	5456504	5457202	+
GWHAAZE00000007	CDS	5457281	5457368	+
GWHAAZE00000007	CDS	5458042	5458104	+
GWHAAZE00000007	CDS	5458203	5458366	+
GWHAAZE00000007	CDS	5458548	5458623	+
GWHAAZE00000007	CDS	5458980	5459039	+
GWHAAZE00000007	CDS	5459121	5459246	+
GWHAAZE00000007	CDS	5459880	5460089	+
GWHAAZE00000007	CDS	5460306	5460397	+
GWHAAZE00000007	CDS	5460566	5460722	+

Transcript Sequence
>GWHTAAZE023358 CCGGCAAATGCTTCAAAATCTCATTCTTCCGACGATAGTGTTATTAATACTCGATCTATTCGTAAATCGGACATGGCTTCTCTCTTCTCCTTCCGTAGCAAGAGCCGGGAGAGAGGATTTGGTTCTCAGGTGCGTCGTTTAACACGCGCTAGGAAGCTCCGGCACCTCACGGATAACGAGGTTTGTATTCCGGGGCCGAATCTGGAGCAGCACGAGCTGTGGCTGTCACCGGGCAGCTCCGAGCCTTCTTCTGCTAGGTCGCAGGCAGGGTCGCCGCTGCCGCTGCCTCTACCGGAATTGGCGGTGCTGCTAAGACGTGATGCTGCCTTGGCTTCGAGTCAGCCGAATAATAGCGCTGGGAAGATTCCTCTACCGTCACCGAAGGATGCGACTAATAAAGGTGGAGAGGAAAGGGAGAAGGTTGAAGCTATGAATGGAGATGTCAATGGCAATGGTTGGAGAAGCTATTTACTGTCTTCTCAAGATGTTGGAAGGAATATAGAGCCTGGCGAAACTCAGCCTTCTAGAAAGTCAATTCAAGAACCAAACGTTGCTGAAAGAATTCAAAACAACAACATCCCCTATACAGAGCACGGTGAAACTCAACCTTCTAGAAAGTCAATTCGAGAACCAAATGTTACTGAAAGAATTCAAAACAACATGCCAAACATTCTAGTGAGTGCTCCCGCTAGTCCTTTCTCAAGTCCTGCACTCGGCCCAAATCCCTTACCTGGGGAACTTTTCACATCTAGTTACTTGTTTCCGCAAGGAAATCAGATTTGGTCTGCACCAGAGTTTCCTCCTCCAGATATGTCACTAGGTTTAGGGTCACCTTATCACATGTCTCTGGAAAAAAATGTAATTAGCGTTGATAATTCCCCCCTCCACAGTCCAAGAGCAAGTCCTCGACAGAATACAAGAAGTTTCACTGGACCTCCATCACCATTGCCTAACAGATTGTCATTTGATGCTTCTATGGCTTGGCGTGAAAGCAATGCTCAGGCTAATGTCCACCCATTACCTCTTCCTCCTGGTGCTGCTGTGCCTTCTCAGCAACCAGCTCCTCCCCAGGTTACAGCTAAACCTGATGTGATGCCGATAAAAGGTAAATGGCAAAAGGGAAAGCTTATTGGGCGTGGGACATTTGGAAGTGTTTATGTTGCATCCAACAGAGAAACTGGAGCTTTATGTGCGATGAAAGAGGTTGAATTATTACCAGATGATCCACAGTCAGCAGAGTGTATAAGGCAATTAGAGCAGGAAATTAAAGTTCTAAGCCAGCTTAAACATCCAAACATTGTCCAGTATTATGGCAGTGAAATAGTTGATGACCGGTTTTACATATATTTGGAGTACGTTCATCCTGGTTCAATTAATAAATACATCCGTGACCACTGTGGAGCAATGACGGAATCTGTTGTACGAAATTTCACCCGGCATATCCTCTCTGGGTTGGCTTACTTGCATAGCACGAAGACGATACACAGGGACATCAAAGGGGCTAATTTGCTTGTTGATGCATATGGGGTTGTTAAGCTTGCTGACTTTGGGATGGCTAAACATCTTACTGGGCAAGCAGCTCATCTTTCTTTAAAAGGAAGTCCATACTGGATGGCTCCTGAGCTCTTACAGTCTGTGATGCAGGACAATAGCGATCCCAATCTTGCTCTAGCAATTGATATTTGGAGTTTGGGTTGTACAATTATTGAAATGATGAATGGGAAACCTCCTTGGAGTGAGTTTGAAGGGGCTGCAGCCATGTTCAAGGTTCTAAGAGAATCCCCTCCCATTCCTGATTCAATGTCACCCGAAGGCAAAGATTTCTTACGTTGTTGTTTTCGTAGAAATCCTGCAGAACGTCCATCAGCTAGCAAGTTACTAGAGCATCGGTTCTTGAAAAACATACAACAACTAGATGTATTATCTTGCACCAAGGCTGTTCATGGGATGAAACTAACGGAAAAATCGCAAACTCAAAAAGAACGTCCCGGTTACAAGCTTGAGCTGCCCGTGACTATCATGCAGAGTACAAGACAGAGAGTGGCAAACACCGAGCCTGACCAACAACCTCACAACATGAAAGCGGTCTCACATTACTCTCCACGGTCAACTCTCGAGGCTCTTCTTAGTTTATCTCCTCCACGCTCAAGGGAGGCCCACCCCCAGAAGATCACTCCAATCCTTTCGGAGTCGCCCCCAGTTCTATGA

Network for GWHGAAZE023328

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	348	608	1.00E-67

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.223
	SRR3591706	second leaf	4.442
	SRR3591707	mature leaf	4.569
	SRR3591708	Shoot apex	5.285
	SRR3591709	Stem	1.957
	SRR3591710	White floral bud	19.668
	SRR3591711	White flower	4.993
	SRR3591712	Green floral bud	14.737
	SRR3591713	Yellow flower	2.682
SRP173429	SRR8316895	Juvenile bud stage	7.062
	SRR8316896	Juvenile bud stage	11.348
	SRR8316897	Juvenile bud stage	5.376
	SRR8316894	Third green stage	4.230
	SRR8316900	Third green stage	15.016
	SRR8316901	Third green stage	15.634
	SRR8316898	Complete white stage	1.989
	SRR8316899	Complete white stage	11.501
	SRR8316903	Complete white stage	3.374
	SRR8316902	Silver flowering stage	4.328
	SRR8316904	Silver flowering stage	6.473
	SRR8316905	Silver flowering stage	3.590
	SRR8316906	Gold flowering stage	13.580
	SRR8316907	Gold flowering stage	10.679
	SRR8316908	Gold flowering stage	11.477
SRP132670	SRR6706286	Control	14.832
	SRR6706287	Light intensity 50%	15.565
	SRR6706288	Light intensity 20%	16.491
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.447
	CNS0095593	Slightly white alabastrum(diploid) 2	10.928
	CNS0095594	Slightly white alabastrum(diploid) 3	9.051
	CNS0095595	Whole white alabastrum(diploid) 2	15.135
	CNS0095596	Whole white alabastrum(diploid) 3	15.414
	CNS0095597	Whole white alabastrum(diploid) 4	16.531
	CNS0095598	Silvery flower (diploied) 1	3.705
	CNS0095599	Silvery flower (diploied) 2	5.464
	CNS0095600	Silvery flower (diploied) 3	3.508
	CNS0095601	Golden flower (diploid) 1	4.401
	CNS0095602	Golden flower (diploid) 2	3.508
	CNS0095603	Golden flower (diploid) 3	3.136
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.732
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.392
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.770
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.377
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.722
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.129
	CNS0095610	Silvery flower (diploied) 1	2.953
	CNS0095611	Silvery flower (diploied) 2	3.633
	CNS0095612	Silvery flower (diploied) 3	10.043
	CNS0095613	Golden flower (tetraploid) 1	1.268
	CNS0095614	Golden flower (tetraploid) 2	1.151
	CNS0095615	Golden flower (tetraploid) 3	4.214
CRA001975	CRR073297	Stem 1	14.067
	CRR073298	Stem 2	14.806
	CRR073299	Stem 3	10.152
	CRR073300	Leaf 1	23.050
	CRR073301	Leaf 2	23.696
	CRR073302	Leaf 3	14.588
	CRR073303	Juvenile bud 1	21.764
	CRR073304	Juvenile bud 2	18.048
	CRR073305	Juvenile bud 3	18.417
	CRR073306	Third green 1	34.377
	CRR073307	Third green 2	24.628
	CRR073308	Third green 3	27.821
	CRR073309	Second white 1	17.411
	CRR073310	Second white 2	22.078
	CRR073311	Second white 3	24.360
	CRR073312	Silver flowering 1	24.689
	CRR073313	Silver flowering 2	18.784
	CRR073314	Silver flowering 3	15.395
	CRR073315	Gold flowering 1	9.133
	CRR073316	Gold flowering 2	18.800
	CRR073317	Gold flowering 3	7.235
	CRR073318	Tawny withering 1	14.675
	CRR073319	Tawny withering 2	14.028
	CRR073320	Tawny withering 3	11.591