Gene detail

Detail information of GWHGAAZE023329

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009586909.1	0	PREDICTED: peroxidase 10-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9FX85\|PER10_ARATH	1E-136	Peroxidase 10 (Precursor)
trEMBL	tr\|K4BCJ4\|K4BCJ4_SOLLC	1E-179	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g090450.2.1}
TAIR10	AT1G49570.1	9E-111	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	5484351	5486459	+
GWHAAZE00000007	mRNA	5484351	5486459	+
GWHAAZE00000007	exon	5484351	5484566	+
GWHAAZE00000007	exon	5485052	5485243	+
GWHAAZE00000007	exon	5485332	5485497	+
GWHAAZE00000007	exon	5486050	5486459	+
GWHAAZE00000007	CDS	5484351	5484566	+
GWHAAZE00000007	CDS	5485052	5485243	+
GWHAAZE00000007	CDS	5485332	5485497	+
GWHAAZE00000007	CDS	5486050	5486459	+

Transcript Sequence
>GWHTAAZE023359 ATGAACCGAGGCGCCTATAAACCCTTAATCCTTCTATCTTTATGTCTCTTGTTTTTGGGTCCTTTTGTATATAGTCAGCTTGATTATAAATTTTACGACACAACTTGTCCCAACCTGACAAAGATTATCAGATACAACATCTTTTCAGCCATTGCCAATGAAACTAGAATGGCCGCGTCTTTGTTGCGCTTGCACTTCCATGATTGTATTGTTAATGGATGTGATGCATCTGTGCTACTCGATGATACCAGCACATTCAGGGGTGAGAAGAATGCAAATCCTAACAGAAATTCAGCCAGAGGTTTTGAGCTTATTGACACAATAAAAGCAAATGTGGAAAAAGCTTGCCCTAACACTGTTTCTTGTGCTGATATATTGAATCTTGCAACCAGAGAGGCTGTCTCTTTTGTTGGCGGACCTTATTGGTTAGTAGCCTTGGGTCGTCGTGACAGCCTAACCGCGAGTGAAAGTGCAGCTAACGCTGAGGTCCCGTCCCCTTTTGAGCCCTTGCAAAACATTACTGCAAAATTTACTTCGAAAGGTCTCGATATTAAAGACGTGGTCATGCTTTCAGGTGCGCATACTATTGGCTTTGCTCAATGCTCCACATTCAAGCAACGGCTGTTCAACTTTGATGGGTCTGGTAACCCTGACCCAACACTCGAGGCATCACTTCTAGGCAACCTACGGACCGTGTGTCCAAACCAAGTCGATTCGGATACCAACCTGGCTCCTCTGGATCCAGTCACAACGACCAAATTTGACAACGTCTATTATAGAAACTTGCTAAACAATTCGGGGCTTCTCCAGTCGGACCAAGTTCTAATGGGGGACAATACAACCGCTGCTATGGTTGTTAACTACAGTAGGTTTCCGTTCTTGTTTGTGAAGGATTTTGGAATTTCAATGATGAAACTTAGCAGCTTAGGTGTACTTACAGGGCAAGATGGGCAGATAAGGAAGAACTGTAGGGTAGTAAACTAA

Network for GWHGAAZE023329

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	47	289	2.10E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.340
	SRR3591706	second leaf	4.685
	SRR3591707	mature leaf	5.697
	SRR3591708	Shoot apex	9.818
	SRR3591709	Stem	19.891
	SRR3591710	White floral bud	13.949
	SRR3591711	White flower	19.831
	SRR3591712	Green floral bud	12.745
	SRR3591713	Yellow flower	5.593
SRP173429	SRR8316895	Juvenile bud stage	2.056
	SRR8316896	Juvenile bud stage	3.122
	SRR8316897	Juvenile bud stage	1.160
	SRR8316894	Third green stage	1.229
	SRR8316900	Third green stage	3.556
	SRR8316901	Third green stage	3.625
	SRR8316898	Complete white stage	9.288
	SRR8316899	Complete white stage	3.639
	SRR8316903	Complete white stage	16.459
	SRR8316902	Silver flowering stage	4.240
	SRR8316904	Silver flowering stage	6.556
	SRR8316905	Silver flowering stage	0.479
	SRR8316906	Gold flowering stage	0.608
	SRR8316907	Gold flowering stage	13.851
	SRR8316908	Gold flowering stage	3.579
SRP132670	SRR6706286	Control	4.799
	SRR6706287	Light intensity 50%	3.509
	SRR6706288	Light intensity 20%	3.515
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.316
	CNS0095593	Slightly white alabastrum(diploid) 2	3.450
	CNS0095594	Slightly white alabastrum(diploid) 3	3.915
	CNS0095595	Whole white alabastrum(diploid) 2	3.611
	CNS0095596	Whole white alabastrum(diploid) 3	3.902
	CNS0095597	Whole white alabastrum(diploid) 4	5.021
	CNS0095598	Silvery flower (diploied) 1	5.556
	CNS0095599	Silvery flower (diploied) 2	6.147
	CNS0095600	Silvery flower (diploied) 3	27.710
	CNS0095601	Golden flower (diploid) 1	7.573
	CNS0095602	Golden flower (diploid) 2	44.719
	CNS0095603	Golden flower (diploid) 3	42.900
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.433
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.551
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.108
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.005
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.992
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.203
	CNS0095610	Silvery flower (diploied) 1	1.623
	CNS0095611	Silvery flower (diploied) 2	3.261
	CNS0095612	Silvery flower (diploied) 3	0.494
	CNS0095613	Golden flower (tetraploid) 1	0.079
	CNS0095614	Golden flower (tetraploid) 2	0.583
	CNS0095615	Golden flower (tetraploid) 3	0.375
CRA001975	CRR073297	Stem 1	2.378
	CRR073298	Stem 2	3.203
	CRR073299	Stem 3	3.363
	CRR073300	Leaf 1	4.144
	CRR073301	Leaf 2	4.192
	CRR073302	Leaf 3	3.984
	CRR073303	Juvenile bud 1	1.762
	CRR073304	Juvenile bud 2	3.396
	CRR073305	Juvenile bud 3	4.940
	CRR073306	Third green 1	0.325
	CRR073307	Third green 2	0.105
	CRR073308	Third green 3	0.480
	CRR073309	Second white 1	0.403
	CRR073310	Second white 2	0.253
	CRR073311	Second white 3	0.315
	CRR073312	Silver flowering 1	0.507
	CRR073313	Silver flowering 2	0.475
	CRR073314	Silver flowering 3	0.231
	CRR073315	Gold flowering 1	0.842
	CRR073316	Gold flowering 2	0.538
	CRR073317	Gold flowering 3	1.505
	CRR073318	Tawny withering 1	4.874
	CRR073319	Tawny withering 2	10.477
	CRR073320	Tawny withering 3	3.159