Gene detail

Detail information of GWHGAAZE023344

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003635416.2	7.9912E-126	PREDICTED: phosphoglycerate mutase-like protein 4 [Vitis vinifera]
COG	YP_004684361.1	8E-42	phosphoglycerate mutase
Swissprot	tr\|Q9SCS3\|PGML4_ARATH	4E-116	Phosphoglycerate mutase-like protein 4 {ECO:0000305}
trEMBL	tr\|A0A068U1S8\|A0A068U1S8_COFCA	4E-120	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02476.1}
TAIR10	AT3G50520.1	1E-92	Phosphoglycerate mutase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	5884919	5888415	+
GWHAAZE00000007	mRNA	5884919	5888415	+
GWHAAZE00000007	exon	5884919	5884938	+
GWHAAZE00000007	exon	5885402	5885495	+
GWHAAZE00000007	exon	5886441	5886491	+
GWHAAZE00000007	exon	5886565	5886675	+
GWHAAZE00000007	exon	5887684	5887815	+
GWHAAZE00000007	exon	5888043	5888118	+
GWHAAZE00000007	exon	5888192	5888415	+
GWHAAZE00000007	CDS	5884919	5884938	+
GWHAAZE00000007	CDS	5885402	5885495	+
GWHAAZE00000007	CDS	5886441	5886491	+
GWHAAZE00000007	CDS	5886565	5886675	+
GWHAAZE00000007	CDS	5887684	5887815	+
GWHAAZE00000007	CDS	5888043	5888118	+
GWHAAZE00000007	CDS	5888192	5888415	+

Transcript Sequence
>GWHTAAZE023374 ATGGCCGATTCTGATTCTAGTAATGGCAAGCCTAGTTCTGATGGTCCTGCTTATGCGGAGATTGTTGTAATACGTCATGGTGAGACAGAGTGGAATGCCGATGGCAGAGTTCAGGGACATCTTGATGTTGAATTAAATGACATTGGGAGACAGCAAGCAGCTGCGGTGGCTGAACGTCTATCCAAGGAGCCTAAAATTTCTGCTGTATACTCATCTGACTTGAAACGAGCTTTTGAGACAGCACAGATAATAGCGAACAGCTGTGGCAGGCTTGAGGTTACCAAAGATCCGGACCTGAGGGAAAGACATTTAGGAGATCTTCAAGGTCTTGTATACAGTGACGCAATCAAAATCTGTCCCGAGGCACATCTAGCTCTTGTTTCTAGTAGGGCAGATCAAGAAATTCCTGGTGGTGGAGAAAGTCGTGATCAGGTTTATCAACGCTGCACATCATCTTTGCAGAGAATTGGAAGCAAACATAAAGGAGAGAAAGTAGTAGTGGTCACCCATGGTGGTGTTATTAGATCACTTCACAAGCGAGCTACCCCAAGGGGACGGTCAGCAGGGAAGATACTAAATACATCTGTCAATGTATTTCATTTGTCGGATGGGGATGAATGGGCCATAGAAGCTTGGGGCGATGTTAGTCATCTCAACCAAATGGGATTCCTCAAGTCTGGTTTTGGCGGGGACGCTACCTCCGGTTAG

Network for GWHGAAZE023344

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0030	map00260 Glycine, serine and threonine metabolism map00680 Methane metabolism map00010 Glycolysis / Gluconeogenesis map01230 Biosynthesis of amino acids map01200 Carbon metabolism GO:0003824 catalytic activity GOslim:molecular_function map01120 Microbial metabolism in diverse environments map00970 Aminoacyl-tRNA biosynthesis

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00300.23	His_Phos_1	21	214	2.60E-58

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15634	gpmB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Methane metabolism	map00680
		Glycine, serine and threonine metabolism	map00260

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.117
	SRR3591706	second leaf	0.913
	SRR3591707	mature leaf	0.755
	SRR3591708	Shoot apex	0.497
	SRR3591709	Stem	1.010
	SRR3591710	White floral bud	0.735
	SRR3591711	White flower	0.872
	SRR3591712	Green floral bud	1.260
	SRR3591713	Yellow flower	1.277
SRP173429	SRR8316895	Juvenile bud stage	12.750
	SRR8316896	Juvenile bud stage	16.796
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	6.873
	SRR8316900	Third green stage	28.698
	SRR8316901	Third green stage	23.209
	SRR8316898	Complete white stage	9.258
	SRR8316899	Complete white stage	27.222
	SRR8316903	Complete white stage	10.185
	SRR8316902	Silver flowering stage	9.937
	SRR8316904	Silver flowering stage	10.085
	SRR8316905	Silver flowering stage	6.835
	SRR8316906	Gold flowering stage	18.129
	SRR8316907	Gold flowering stage	16.647
	SRR8316908	Gold flowering stage	6.375
SRP132670	SRR6706286	Control	32.941
	SRR6706287	Light intensity 50%	29.324
	SRR6706288	Light intensity 20%	35.525
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.777
	CNS0095593	Slightly white alabastrum(diploid) 2	13.142
	CNS0095594	Slightly white alabastrum(diploid) 3	13.308
	CNS0095595	Whole white alabastrum(diploid) 2	15.263
	CNS0095596	Whole white alabastrum(diploid) 3	13.426
	CNS0095597	Whole white alabastrum(diploid) 4	13.523
	CNS0095598	Silvery flower (diploied) 1	8.351
	CNS0095599	Silvery flower (diploied) 2	10.145
	CNS0095600	Silvery flower (diploied) 3	11.053
	CNS0095601	Golden flower (diploid) 1	7.335
	CNS0095602	Golden flower (diploid) 2	10.855
	CNS0095603	Golden flower (diploid) 3	9.257
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.010
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.013
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.010
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.007
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.158
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.186
	CNS0095612	Silvery flower (diploied) 3	0.005
	CNS0095613	Golden flower (tetraploid) 1	0.116
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	16.547
	CRR073298	Stem 2	13.980
	CRR073299	Stem 3	11.631
	CRR073300	Leaf 1	16.630
	CRR073301	Leaf 2	17.774
	CRR073302	Leaf 3	15.237
	CRR073303	Juvenile bud 1	16.071
	CRR073304	Juvenile bud 2	15.109
	CRR073305	Juvenile bud 3	16.672
	CRR073306	Third green 1	7.876
	CRR073307	Third green 2	8.231
	CRR073308	Third green 3	8.046
	CRR073309	Second white 1	8.809
	CRR073310	Second white 2	7.234
	CRR073311	Second white 3	4.804
	CRR073312	Silver flowering 1	3.477
	CRR073313	Silver flowering 2	2.881
	CRR073314	Silver flowering 3	8.477
	CRR073315	Gold flowering 1	9.207
	CRR073316	Gold flowering 2	7.734
	CRR073317	Gold flowering 3	4.071
	CRR073318	Tawny withering 1	9.110
	CRR073319	Tawny withering 2	8.467
	CRR073320	Tawny withering 3	8.029