Gene detail

Detail information of GWHGAAZE023394

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282867.1	1.5195E-163	PREDICTED: caffeoyl-CoA O-methyltransferase [Vitis vinifera]
COG	YP_007108508.1	6E-58	O-methyltransferase family protein
Swissprot	tr\|Q43095\|CAMT_POPTM	2E-163	Caffeoyl-CoA O-methyltransferase
trEMBL	tr\|D7SVV2\|D7SVV2_VITVI	6E-164	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI21401.3}
TAIR10	AT4G34050.1	4E-124	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	7224806	7226699	+
GWHAAZE00000007	mRNA	7224806	7226699	+
GWHAAZE00000007	exon	7224806	7224889	+
GWHAAZE00000007	exon	7225575	7225702	+
GWHAAZE00000007	exon	7225796	7225940	+
GWHAAZE00000007	exon	7226036	7226170	+
GWHAAZE00000007	exon	7226406	7226699	+
GWHAAZE00000007	CDS	7224806	7224889	+
GWHAAZE00000007	CDS	7225575	7225702	+
GWHAAZE00000007	CDS	7225796	7225940	+
GWHAAZE00000007	CDS	7226036	7226170	+
GWHAAZE00000007	CDS	7226406	7226699	+

Transcript Sequence
>GWHTAAZE023424 ATGGCCACTACAGAAGTAAATCAACCTGCCAGGCACCAAGAAGTTGGCCACAAGAGCCTCCTTCAAAGTGATGCCCTTTACCAGTCTATCCTTTTTCCAATCTCAACCCTTCTTCCAATTTGTTTGTTGCAGTATATACTCGAAACCAGTGTTTACCCAAGAGAACCAGAGCCCATGAAAGAGCTGCGCGAGGTGACCGCAAAACACCCTTGGAACCTGATGACAACCTCGGCCGATGAAGGGCAGTTCTTGAACATGCTCCTGAAGCTCATCAATGCCAAGAACACCATGGAGATCGGTGTTTACACCGGCTACTCTCTCCTCGCCACTGCCCTTGCTCTTCCCGATGATGGAAAGATATTGGCTATGGATATCAATCGTGAAAACTACGAAGAATTAGGTCTTCCGGTTATCGAGAAGGCCGGTGTTGCTCATAAGATCGATTTCAAAGAAGGCCCTGCTCTTCCTGTTCTTGACCAAATGATAGAAGATGGAAAGTATCACGGAACGTTTGATTTCATCTTTGTTGACGCGGACAAAGACAACTATATTAACTACCACAAGAGGCTGATTGACCTTGTCAAAGTTGGGGGACTGATCGGCTATGACAACACCCTATGGAACGGATCTGTGGTGGCACCACCGGATGCACCGATGAGAAAGTATGTTAGGTACTACAGGGATTTCGTGATGGAGCTCAACAAGGCCCTGGCCGTTGATCCAAGGATCGAGATTTGCCAGCTTCCAGTAGGAGATGGGATTACTTTATGCCGCCGTATCAGCTAA

Network for GWHGAAZE023394

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0016	GO:0006559 L-phenylalanine catabolic process GOslim:biological_process map00940 Phenylpropanoid biosynthesis GO:0016841 ammonia-lyase activity GOslim:molecular_function GO:0008171 O-methyltransferase activity GOslim:molecular_function GO:0005737 cytoplasm GOslim:cellular_component map00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis map00360 Phenylalanine metabolism map00941 Flavonoid biosynthesis map01110 Biosynthesis of secondary metabolites

Module ID

Function Annotation

CFinderModule0016

GO:0006559 L-phenylalanine catabolic process GOslim:biological_process
map00940 Phenylpropanoid biosynthesis
GO:0016841 ammonia-lyase activity GOslim:molecular_function
GO:0008171 O-methyltransferase activity GOslim:molecular_function
GO:0005737 cytoplasm GOslim:cellular_component
map00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
map00360 Phenylalanine metabolism
map00941 Flavonoid biosynthesis
map01110 Biosynthesis of secondary metabolites

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01596.18	Methyltransf_3	48	260	8.40E-98

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00588	E2.1.1.104	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940
		Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
		Flavonoid biosynthesis	map00941

Gene Ontology

GO term	Ontology	Name
GO:0008171	molecular_function	O-methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	187.709
	SRR3591706	second leaf	39.776
	SRR3591707	mature leaf	44.068
	SRR3591708	Shoot apex	37.352
	SRR3591709	Stem	1887.669
	SRR3591710	White floral bud	94.978
	SRR3591711	White flower	125.198
	SRR3591712	Green floral bud	53.224
	SRR3591713	Yellow flower	180.585
SRP173429	SRR8316895	Juvenile bud stage	73.885
	SRR8316896	Juvenile bud stage	67.222
	SRR8316897	Juvenile bud stage	27.609
	SRR8316894	Third green stage	17.558
	SRR8316900	Third green stage	51.188
	SRR8316901	Third green stage	43.086
	SRR8316898	Complete white stage	60.561
	SRR8316899	Complete white stage	75.409
	SRR8316903	Complete white stage	79.897
	SRR8316902	Silver flowering stage	167.950
	SRR8316904	Silver flowering stage	209.967
	SRR8316905	Silver flowering stage	109.975
	SRR8316906	Gold flowering stage	579.518
	SRR8316907	Gold flowering stage	519.202
	SRR8316908	Gold flowering stage	831.245
SRP132670	SRR6706286	Control	61.867
	SRR6706287	Light intensity 50%	46.780
	SRR6706288	Light intensity 20%	47.319
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.613
	CNS0095593	Slightly white alabastrum(diploid) 2	13.164
	CNS0095594	Slightly white alabastrum(diploid) 3	43.045
	CNS0095595	Whole white alabastrum(diploid) 2	10.312
	CNS0095596	Whole white alabastrum(diploid) 3	15.001
	CNS0095597	Whole white alabastrum(diploid) 4	10.607
	CNS0095598	Silvery flower (diploied) 1	22.578
	CNS0095599	Silvery flower (diploied) 2	15.721
	CNS0095600	Silvery flower (diploied) 3	47.210
	CNS0095601	Golden flower (diploid) 1	32.394
	CNS0095602	Golden flower (diploid) 2	77.601
	CNS0095603	Golden flower (diploid) 3	73.716
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.957
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.428
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.814
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.255
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.411
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.521
	CNS0095610	Silvery flower (diploied) 1	31.415
	CNS0095611	Silvery flower (diploied) 2	16.449
	CNS0095612	Silvery flower (diploied) 3	34.618
	CNS0095613	Golden flower (tetraploid) 1	78.633
	CNS0095614	Golden flower (tetraploid) 2	79.409
	CNS0095615	Golden flower (tetraploid) 3	58.458
CRA001975	CRR073297	Stem 1	97.441
	CRR073298	Stem 2	68.478
	CRR073299	Stem 3	69.507
	CRR073300	Leaf 1	44.410
	CRR073301	Leaf 2	44.235
	CRR073302	Leaf 3	77.946
	CRR073303	Juvenile bud 1	55.465
	CRR073304	Juvenile bud 2	22.071
	CRR073305	Juvenile bud 3	69.670
	CRR073306	Third green 1	1112.508
	CRR073307	Third green 2	634.230
	CRR073308	Third green 3	749.518
	CRR073309	Second white 1	603.845
	CRR073310	Second white 2	608.052
	CRR073311	Second white 3	780.283
	CRR073312	Silver flowering 1	1117.270
	CRR073313	Silver flowering 2	933.184
	CRR073314	Silver flowering 3	1031.677
	CRR073315	Gold flowering 1	9.680
	CRR073316	Gold flowering 2	18.139
	CRR073317	Gold flowering 3	20.887
	CRR073318	Tawny withering 1	426.731
	CRR073319	Tawny withering 2	498.316
	CRR073320	Tawny withering 3	385.616