Gene detail

Detail information of GWHGAAZE023397

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN65605.1	4.771E-150	hypothetical protein VITISV_042267 [Vitis vinifera]
Swissprot	tr\|P47927\|AP2_ARATH	2E-99	Floral homeotic protein APETALA 2
trEMBL	tr\|A5BFY6\|A5BFY6_VITVI	2E-150	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN65605.1}
TAIR10	AT4G36920.2	1E-82	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	7304891	7308994	-
GWHAAZE00000007	mRNA	7304891	7308994	-
GWHAAZE00000007	exon	7304891	7305079	-
GWHAAZE00000007	exon	7306106	7306285	-
GWHAAZE00000007	exon	7306613	7306782	-
GWHAAZE00000007	exon	7306965	7307056	-
GWHAAZE00000007	exon	7307281	7307325	-
GWHAAZE00000007	exon	7307408	7307553	-
GWHAAZE00000007	exon	7307911	7307998	-
GWHAAZE00000007	exon	7308561	7308994	-
GWHAAZE00000007	CDS	7308561	7308994	-
GWHAAZE00000007	CDS	7307911	7307998	-
GWHAAZE00000007	CDS	7307408	7307553	-
GWHAAZE00000007	CDS	7307281	7307325	-
GWHAAZE00000007	CDS	7306965	7307056	-
GWHAAZE00000007	CDS	7306613	7306782	-
GWHAAZE00000007	CDS	7306106	7306285	-
GWHAAZE00000007	CDS	7304891	7305079	-

Transcript Sequence
>GWHTAAZE023427 ATGTGGAATTTAAATGACTCACCGGATCACAGACCCGATGAAGAATCAGAAGACCATCGGGTTGGATCTATGTCGAATTCCAGCTCATCAGCAGTAGTAATTGAAGACGGCTCCGAGGAAGAAGAATATGGGGGAAAGAAGCGGAGCAGCAAGATATTTGAGCTTTCATTAGCTAACAACTGCTTGCCGGAGACCCAATCCCCGGTGACCCGACAGTTTTTTCCGATGGATCATTCAGAAATGGGGAGCCCAAAAGCATATTTGACTGAGACAAACTTTGGTGATTCGGTTCTTCTGAACAGTGGCGTCACCGGAAAGCCCGCCGAGATTCCTCAGCCACTTAAGAAGAGCCGGAGGGGCCCGCGGTCGAGAAGTTCTCAGTACCGCGGGGTTACCTTTTACCGGCGAACCGGCCGGTGGGAGTCCCATATTTGTGCATATGATAGGGCAGCTATCAAGTTCCGGGGAGTGGAAGCAGACATAAATTTTAGTCTGGAAGATTATGGGGATGACTTGAAACAGATGAATAATCTAACAAAAGAGGAGTTTGTACATGTGCTGAGAAGACAAAGTACTGGTCTTCCCAGGGGGAGCTCAAAGTATAGAGGGGTAACTTTACATAAATGTGGAAGATGGGAAGCTAGAATGGGCCAGTTTTTAGGCAAAAAGTATGTCTACTTGGGTCTTTTTGATACTGAAATTGAAGCTGCTAGGGCTTATGACAAGGCTGCTATTAAGTGTAATGGAAAAGAAGCTGTTACCAACTTCGTTTACAGCAGTTATGAAAATGAGATCAACTCAACTGAATCATCGGGTACTATCGGAACAGGCCACAATCTTGATTTGAGCTTGGGTGGTTCAGCGTCGAAACAGATTATGCAGGAAATTAAGGGTATTTGTTCCAGTAAAATGGATCATCATTCGGCCTCCTCGCGATTTGAAGTTGATGGCGGGAATCATGAATTTAAATCCAAGATAAATATGCATCAAGATTCAATCAGAGAAGGTTACAATGAGTCTGAAACATTGCAGCTTCTGAGCCAAACACACCTTCAATCAGCGAATGAAATGCAGAGATATGGGCAGCAGCCATTGATCAAAGCTGGTGATCAACAACAAAGGCTTCACATGTTAACTCCGCAATTCAGTTACCAATTTCCAAGCAGCAGCAGCGGTAGCAATTATGGAGTAGACCTTGCTCAATCTACAAGTAGGGCACATAATTATAATAATCAACAGCGGCAATACACCAATTCTGCCCAGTTGTATGCAAGTGCTGCTGCAGCATCATCAGGATTCCCACAGCAGATTACACCCGAATCTTGGTTCTCGAGACGCCCCTAA

Network for GWHGAAZE023397

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	199	248	2.90E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.792
	SRR3591706	second leaf	3.008
	SRR3591707	mature leaf	7.297
	SRR3591708	Shoot apex	7.324
	SRR3591709	Stem	5.120
	SRR3591710	White floral bud	5.042
	SRR3591711	White flower	14.676
	SRR3591712	Green floral bud	8.565
	SRR3591713	Yellow flower	9.594
SRP173429	SRR8316895	Juvenile bud stage	1.905
	SRR8316896	Juvenile bud stage	5.478
	SRR8316897	Juvenile bud stage	3.496
	SRR8316894	Third green stage	3.726
	SRR8316900	Third green stage	18.985
	SRR8316901	Third green stage	17.408
	SRR8316898	Complete white stage	3.441
	SRR8316899	Complete white stage	16.738
	SRR8316903	Complete white stage	4.594
	SRR8316902	Silver flowering stage	4.628
	SRR8316904	Silver flowering stage	5.802
	SRR8316905	Silver flowering stage	3.044
	SRR8316906	Gold flowering stage	7.766
	SRR8316907	Gold flowering stage	7.429
	SRR8316908	Gold flowering stage	12.202
SRP132670	SRR6706286	Control	20.582
	SRR6706287	Light intensity 50%	19.722
	SRR6706288	Light intensity 20%	21.279
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.624
	CNS0095593	Slightly white alabastrum(diploid) 2	9.016
	CNS0095594	Slightly white alabastrum(diploid) 3	6.202
	CNS0095595	Whole white alabastrum(diploid) 2	10.407
	CNS0095596	Whole white alabastrum(diploid) 3	11.708
	CNS0095597	Whole white alabastrum(diploid) 4	10.185
	CNS0095598	Silvery flower (diploied) 1	7.257
	CNS0095599	Silvery flower (diploied) 2	7.492
	CNS0095600	Silvery flower (diploied) 3	13.807
	CNS0095601	Golden flower (diploid) 1	6.666
	CNS0095602	Golden flower (diploid) 2	9.373
	CNS0095603	Golden flower (diploid) 3	7.965
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.057
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.036
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.296
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.089
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.992
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.146
	CNS0095610	Silvery flower (diploied) 1	12.717
	CNS0095611	Silvery flower (diploied) 2	9.370
	CNS0095612	Silvery flower (diploied) 3	8.042
	CNS0095613	Golden flower (tetraploid) 1	6.235
	CNS0095614	Golden flower (tetraploid) 2	9.915
	CNS0095615	Golden flower (tetraploid) 3	5.016
CRA001975	CRR073297	Stem 1	6.970
	CRR073298	Stem 2	8.353
	CRR073299	Stem 3	3.214
	CRR073300	Leaf 1	13.633
	CRR073301	Leaf 2	16.117
	CRR073302	Leaf 3	12.747
	CRR073303	Juvenile bud 1	10.019
	CRR073304	Juvenile bud 2	5.953
	CRR073305	Juvenile bud 3	7.812
	CRR073306	Third green 1	4.799
	CRR073307	Third green 2	2.186
	CRR073308	Third green 3	3.514
	CRR073309	Second white 1	2.890
	CRR073310	Second white 2	2.816
	CRR073311	Second white 3	3.198
	CRR073312	Silver flowering 1	2.147
	CRR073313	Silver flowering 2	2.634
	CRR073314	Silver flowering 3	2.088
	CRR073315	Gold flowering 1	2.735
	CRR073316	Gold flowering 2	2.808
	CRR073317	Gold flowering 3	1.101
	CRR073318	Tawny withering 1	4.693
	CRR073319	Tawny withering 2	7.051
	CRR073320	Tawny withering 3	2.963