Gene detail

Detail information of GWHGAAZE023416

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001268121.1	5.3282E-124	sucrose responsive element binding protein [Vitis vinifera]
Swissprot	tr\|Q9FDW1\|MYB44_ARATH	2E-94	Transcription factor MYB44
trEMBL	tr\|F6HSY7\|F6HSY7_VITVI	2E-125	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57797.1}
TAIR10	AT4G37260.1	2E-70	myb domain protein 73

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	7790840	7791742	+
GWHAAZE00000007	mRNA	7790840	7791742	+
GWHAAZE00000007	exon	7790840	7791742	+
GWHAAZE00000007	CDS	7790840	7791742	+

Transcript Sequence
>GWHTAAZE023446 ATGGATCGGATTAAAGGTCCATGGAGCCCCGAAGAAGACGAGTTGCTTACGAAGTTGGTGCAAAAACACGGACCTCGTAACTGGTCTCTGATTAGCCGGGCGATACCCGGTAGATCCGGGAAATCGTGCCGGTTACGTTGGTGTAACCAGCTCTCTCCTCAGGTTGAGCACAGAGCTTTCACGCCAGATGAAGACGAGACCATTATTAGAGCTCATGCTCGGTTCGGTAACAAATGGGCTACGATAGCCCGACTGCTATCGGGTCGGACCGATAACGCGATAAAGAATCACTGGAACTCTACTCTTAAGAGGAAGTGCTCTTCTATGATGAGTTGTGGTGAAGATGGTGAGGGTTACGAGAATCAGCAGCAGCAGCAGCCTCTTAAGAGGTCGGTTAGTGCCGGATCAGCTATACCGATTTCTGGACTCTACTTGAGTCCGGATAGCCCGTCCGGATCCGACGCTAGTGATTCGAGCGCTCCGGTTTTGTCATCCTCGCAACTCTTCCGACCTCCTCCTGTACCTAAAACCGGAGGGGTTTATACAGCGGAAATGGTCTCGACCAGGATCGATCCTCCGACCTCACTCAGTCTGTCGCTTCCGGGAACTGATGCATCTACAGAGCCTCTCTCGACTCCACCTGTGCCGATGAATCAGCAAAATCAGGAGTTCCGATCGATGCAACAACTTCCTCAAAATAGCGGCGAGAAGGCGTTTGCGCCTTTTAGTGCGGAGTTCGTAGCGGTGATGCAAGAGATGATAAGGAAGGAGGTGAGGAATTATATGGCGATGGCGAGTATCGAACAACCGCAGCAGCATCAGATTATTGGGGGAAATGGCCATGGGCACGGGATGTGTATGCAGCAAGATGGATTCAGGATTGGGATAAGTAGGGTTGAGTAG

Network for GWHGAAZE023416

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	5	50	6.00E-18
PF00249.32	Myb_DNA-binding	59	100	4.10E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.740
	SRR3591706	second leaf	21.266
	SRR3591707	mature leaf	48.459
	SRR3591708	Shoot apex	28.913
	SRR3591709	Stem	50.205
	SRR3591710	White floral bud	63.922
	SRR3591711	White flower	207.375
	SRR3591712	Green floral bud	10.582
	SRR3591713	Yellow flower	193.843
SRP173429	SRR8316895	Juvenile bud stage	50.607
	SRR8316896	Juvenile bud stage	22.027
	SRR8316897	Juvenile bud stage	27.393
	SRR8316894	Third green stage	7.600
	SRR8316900	Third green stage	6.430
	SRR8316901	Third green stage	8.664
	SRR8316898	Complete white stage	20.142
	SRR8316899	Complete white stage	33.541
	SRR8316903	Complete white stage	36.724
	SRR8316902	Silver flowering stage	96.644
	SRR8316904	Silver flowering stage	90.397
	SRR8316905	Silver flowering stage	44.260
	SRR8316906	Gold flowering stage	146.818
	SRR8316907	Gold flowering stage	192.467
	SRR8316908	Gold flowering stage	153.563
SRP132670	SRR6706286	Control	22.462
	SRR6706287	Light intensity 50%	22.945
	SRR6706288	Light intensity 20%	19.707
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.521
	CNS0095593	Slightly white alabastrum(diploid) 2	12.665
	CNS0095594	Slightly white alabastrum(diploid) 3	16.852
	CNS0095595	Whole white alabastrum(diploid) 2	11.301
	CNS0095596	Whole white alabastrum(diploid) 3	1.471
	CNS0095597	Whole white alabastrum(diploid) 4	10.598
	CNS0095598	Silvery flower (diploied) 1	65.691
	CNS0095599	Silvery flower (diploied) 2	79.781
	CNS0095600	Silvery flower (diploied) 3	153.618
	CNS0095601	Golden flower (diploid) 1	98.577
	CNS0095602	Golden flower (diploid) 2	145.663
	CNS0095603	Golden flower (diploid) 3	139.655
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.726
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.707
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.203
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.179
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.681
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.581
	CNS0095610	Silvery flower (diploied) 1	115.048
	CNS0095611	Silvery flower (diploied) 2	91.308
	CNS0095612	Silvery flower (diploied) 3	183.048
	CNS0095613	Golden flower (tetraploid) 1	86.416
	CNS0095614	Golden flower (tetraploid) 2	83.237
	CNS0095615	Golden flower (tetraploid) 3	96.657
CRA001975	CRR073297	Stem 1	28.801
	CRR073298	Stem 2	18.670
	CRR073299	Stem 3	44.465
	CRR073300	Leaf 1	4.623
	CRR073301	Leaf 2	6.685
	CRR073302	Leaf 3	8.508
	CRR073303	Juvenile bud 1	9.047
	CRR073304	Juvenile bud 2	4.653
	CRR073305	Juvenile bud 3	29.133
	CRR073306	Third green 1	391.340
	CRR073307	Third green 2	385.673
	CRR073308	Third green 3	347.007
	CRR073309	Second white 1	495.348
	CRR073310	Second white 2	404.789
	CRR073311	Second white 3	374.591
	CRR073312	Silver flowering 1	489.757
	CRR073313	Silver flowering 2	500.271
	CRR073314	Silver flowering 3	432.212
	CRR073315	Gold flowering 1	103.390
	CRR073316	Gold flowering 2	99.911
	CRR073317	Gold flowering 3	84.200
	CRR073318	Tawny withering 1	118.125
	CRR073319	Tawny withering 2	105.006
	CRR073320	Tawny withering 3	96.310