Gene detail

Detail information of GWHGAAZE023433

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278713.1	1.4633E-163	PREDICTED: probable receptor-like protein kinase At5g24010 [Vitis vinifera]
Swissprot	tr\|O22187\|Y2232_ARATH	2E-114	Probable receptor-like protein kinase At2g23200 (Precursor)
trEMBL	tr\|D7TTD9\|D7TTD9_VITVI	5E-164	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI33761.3}
TAIR10	AT2G23200.1	4E-101	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	8409270	8411704	-
GWHAAZE00000007	mRNA	8409270	8411704	-
GWHAAZE00000007	exon	8409270	8409733	-
GWHAAZE00000007	exon	8410001	8410479	-
GWHAAZE00000007	exon	8410561	8410658	-
GWHAAZE00000007	exon	8410772	8411704	-
GWHAAZE00000007	CDS	8410772	8411704	-
GWHAAZE00000007	CDS	8410561	8410658	-
GWHAAZE00000007	CDS	8410001	8410479	-
GWHAAZE00000007	CDS	8409270	8409733	-

Transcript Sequence
>GWHTAAZE023463 ATGGAAAACCTTTACCCCCACACCATAATTTTCTCTCTCTACCTCCTCTTCCACTTCTCTTCACCTTACACTTTACCCGACCACTACTTCATCAACTGTGGCTCCTCCTCCACCGCCACCATCAACGGCCGGAACTTCACCGGCGACACCAACTCACATCTCCTCTCCACCGCCAGCGAAACCACTATTAACCCCTCAACGGTCAATCCACCTCTCTATCAAACTGCTAGAATTTTCAAAAACCCTTCTTTTTACAGCCTTCAAATCCGCGAAAATGGTATTTACGTGGTAAGATTCCATTTTTACCCCTTTCTCTCTCTACCCAATGCTCAATTCAACGTTTCTGTTCATGGGTTTACTTTATTAGTGGATTTCCATGTTCCAAACACTACGAATTCACCTCTAATCAAAGAGTTTTTACTCACAATTCACCAACCAAAATTTGAAATCCACTTCACACCATCAAAGCCCTCTTCTTTTGCTTTTGTAAATGCAATTGAAGCATTTATTGCCCCTCAAAATTTCACCCCCAATTCTCACGTTTTACACACAATTCATAGGATTAATATTGGAGGTCCTAAATTGACCCAAGATAATGATACCCTTTTGAGGAATTGGGTTGGTGATGATGATTATCTCTTTTTTAAGGGTGCTGCACGAAACAGTCCATTTTATGAAAGTGTACCTAACTACCTAGAAGGAGGGGCAGATGAATTCACAGCCCCTAATATTGTGTACCAAACAGCCAAGCAATTGAATAGAGAGAGTGATAGTAAGGAAAATACTCTCTTCAACATGACTTGGCGATTCAATGTGACGAAAAACGCTTCTCATTTTGTTCGGGCGCATTTTTGTGATATTGTTAATGTGGGGCAGAGTTATGGCAAGTTCAATTTCTTTGTTGATGAAATCTTTGCTGGGGTGATTAGTCCGGATATAATACCGTTTATAAACGGGCTTGAGATTATGGAGATAATGAAGGATTTGCCCTCGTTTGTTCCAAGAGAATCGATGAAGAAAAAGAATACAGTGAGAGCTAAGCCTGTTGATAGTTTTGATCGGCCATTAGCGCTTTTACATGGAGGAAGTTCATATGCTACTGTTAGTTCAAGAAATGTTAATGCCTCTCCGGGTACTCTAAATCTTGGGTTGAAACTAAATTTTGATGAAATTTTATATGCAACAAATAGTTTCGATCCAAAGTTGATGATTGGCGAGGGCGGGTTTGGGAAAGTGTACAAAGGGACCCTTCGAATTGGAACAAAAGTGGCTGTGAAACGGAGTGAACCAGGGCATGGACAAGGCCTATCCGAGTTCAACACAGAAATAATGGTTTTGTCGAAGATTCGCTATATCCATCTCGTTTCTTTAATCGGGTACTGTGATGAAAGATCAGAGATGATATTGGTTTACGAGTTTATGGAGAAAGGGACATTAAGAGAGCATTTGTATAGCTCTAATAATCAAGAATCCAAATTGTCTTGGAGCAAAAGGCTTGAAATTTGTATTGTGCTATGCGCTAGGCCAGCTATTAACATCTGGCTCCCTCGTGATGAAGTGAATTTGGCTGATTGGGGGATTTCTCGGCAAAAGATAGGGGAACTCGAGAAGATCATTGATCCTTTTCTTGTGGGTAAGATTAATCCGAATTCTTTGAGGAAATTCGGGGAGACGGTGGAGAAGTGTTTGAGGGAATCCGGTGTTGAGAGGCCTAGTATGGTTGATGTAATGTGGGATTTGGAGTATGCATTTCTACTTCAACAAACACATGTGGTGAGAGAGCCACATGAGGATAGTACCACCACTACAAATGAATATTCTTGGGGTCAATTTGCATTGCCTCATGGAATTAATCCTTTGGATTCTCAAAGCATCGCAATTGAAGAAGATTATTTAATAAGTGAGGTTTCAGGTTCAAGTTTTGGAAATGCAAGTGGAGTGTTTTCACAGTTGAAGGTTGATGATGCAAGATGA

Network for GWHGAAZE023433

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	31	303	3.60E-22
PF07714.18	PK_Tyr_Ser-Thr	403	505	7.70E-16

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.825
	SRR3591706	second leaf	3.754
	SRR3591707	mature leaf	6.160
	SRR3591708	Shoot apex	1.516
	SRR3591709	Stem	2.020
	SRR3591710	White floral bud	1.126
	SRR3591711	White flower	1.756
	SRR3591712	Green floral bud	0.752
	SRR3591713	Yellow flower	0.236
SRP173429	SRR8316895	Juvenile bud stage	1.299
	SRR8316896	Juvenile bud stage	1.314
	SRR8316897	Juvenile bud stage	0.331
	SRR8316894	Third green stage	0.844
	SRR8316900	Third green stage	0.743
	SRR8316901	Third green stage	0.772
	SRR8316898	Complete white stage	0.120
	SRR8316899	Complete white stage	1.634
	SRR8316903	Complete white stage	0.610
	SRR8316902	Silver flowering stage	0.451
	SRR8316904	Silver flowering stage	0.461
	SRR8316905	Silver flowering stage	0.227
	SRR8316906	Gold flowering stage	1.077
	SRR8316907	Gold flowering stage	0.410
	SRR8316908	Gold flowering stage	0.991
SRP132670	SRR6706286	Control	2.177
	SRR6706287	Light intensity 50%	1.649
	SRR6706288	Light intensity 20%	1.374
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.008
	CNS0095593	Slightly white alabastrum(diploid) 2	0.709
	CNS0095594	Slightly white alabastrum(diploid) 3	1.378
	CNS0095595	Whole white alabastrum(diploid) 2	0.677
	CNS0095596	Whole white alabastrum(diploid) 3	0.126
	CNS0095597	Whole white alabastrum(diploid) 4	0.567
	CNS0095598	Silvery flower (diploied) 1	2.606
	CNS0095599	Silvery flower (diploied) 2	0.898
	CNS0095600	Silvery flower (diploied) 3	0.709
	CNS0095601	Golden flower (diploid) 1	1.997
	CNS0095602	Golden flower (diploid) 2	1.819
	CNS0095603	Golden flower (diploid) 3	1.481
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.108
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.753
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.830
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.178
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.590
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.720
	CNS0095610	Silvery flower (diploied) 1	0.816
	CNS0095611	Silvery flower (diploied) 2	1.069
	CNS0095612	Silvery flower (diploied) 3	0.526
	CNS0095613	Golden flower (tetraploid) 1	0.403
	CNS0095614	Golden flower (tetraploid) 2	1.090
	CNS0095615	Golden flower (tetraploid) 3	0.234
CRA001975	CRR073297	Stem 1	2.165
	CRR073298	Stem 2	2.012
	CRR073299	Stem 3	1.614
	CRR073300	Leaf 1	1.630
	CRR073301	Leaf 2	1.413
	CRR073302	Leaf 3	0.652
	CRR073303	Juvenile bud 1	1.001
	CRR073304	Juvenile bud 2	0.198
	CRR073305	Juvenile bud 3	1.202
	CRR073306	Third green 1	0.182
	CRR073307	Third green 2	0.084
	CRR073308	Third green 3	0.085
	CRR073309	Second white 1	0.051
	CRR073310	Second white 2	0.023
	CRR073311	Second white 3	0.058
	CRR073312	Silver flowering 1	0.017
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.012
	CRR073315	Gold flowering 1	3.417
	CRR073316	Gold flowering 2	7.458
	CRR073317	Gold flowering 3	6.379
	CRR073318	Tawny withering 1	3.185
	CRR073319	Tawny withering 2	3.083
	CRR073320	Tawny withering 3	2.193