Gene detail

Detail information of GWHGAAZE023436

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007047433.1	0	Natural resistance-associated macrophage protein 3 [Theobroma cacao]
COG	YP_004655016.1	3E-88	Manganese transport protein mntH
Swissprot	tr\|Q9SNV9\|NRAM3_ARATH	0	Metal transporter Nramp3
trEMBL	tr\|A0A061DGW0\|A0A061DGW0_THECC	0	Natural resistance-associated macrophage protein 3 {ECO:0000313\|EMBL:EOX91590.1}
TAIR10	AT2G23150.1	0	natural resistance-associated macrophage protein 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	8548759	8551873	+
GWHAAZE00000007	mRNA	8548759	8551873	+
GWHAAZE00000007	exon	8548759	8549099	+
GWHAAZE00000007	exon	8549835	8549971	+
GWHAAZE00000007	exon	8550075	8550727	+
GWHAAZE00000007	exon	8551435	8551873	+
GWHAAZE00000007	CDS	8548759	8549099	+
GWHAAZE00000007	CDS	8549835	8549971	+
GWHAAZE00000007	CDS	8550075	8550727	+
GWHAAZE00000007	CDS	8551435	8551659	+
GWHAAZE00000007	three_prime_UTR	8551660	8551873	+

Transcript Sequence
>GWHTAAZE023466 ATGAGCATAGCATTTCTTGATCCGGGAAATTTAGAGGGTGATCTTCAAGCCGGCGCCATAGCCGGCTACTCTCTCTTATGGCTGCTACTGTGGGCCACGGCTATGGGCCTTTTGGTTCAGCTACTGTCGGCCCGGCTCGGGGTTGCGACTGGGCGGCACTTAGCCGAGCTGTGTAGGGACGAGTACCCCAAGTGGGCCCGGTTGCTATTGTGGGTCATGTCTGAACTGGCTTTAATTGGGGCTGATATACAGGAGGTTATTGGGAGTGCTATTGCCATTAAGATTTTGAGTAATGGGGTTTTGCCACTTTGGGCTGGGGTTCTTATAACTGCCTTTGATTGTTTCATATTCCTATTTCTTGAGAACTATGGTGTGAGGAAGTTAGAAGCCCTTTTCGCTGTCCTCATTGCAATAATGGCAGTCTCATTTGCTTGGATGTTTGGCGAAACAAAGCCCAGTGGCATAGAACTTCTTCAAGGTACTTTGATTCCAAAACTTAGCTCAAAAACGATACAACAGGCCGTTGGAGTAGTGGGTTGCATTATTATGCCTCACAACATATTCTTACACTCTGCCCTTGTACAATCAAGAGAGGTAGATCACCATAAGATAGGACGGGTCCGAGAAGCACTCAAGTATTATTCCATAGAGTCTGGAGCGGCCCTTGCAATCTCCTTTGTGATCAATCTTTTCGTTACGACAGTCTTCGCAAAGGCGTTCTATGGAACCGAACAGGCCAATAACATTGGCCTTGGGAATGCGGGACAATATCTTCAAGAAAAATTTGGTGGAGGGGTAGTTCCTATTTTGTACATTTGGGCTATTGGACTACTAGCAGCTGGACAAAGTAGTACTATCACAGGAACCTATGCGGGGCAGTTTATAATGGGTGGGTTTTTGAACTTGCGGTTGAAGAAGTGGATGAGGGCACTGATAACAAGGAGCTTTGCTATCATCCCAACTTTGATGGTTGCTCTTATTTTCGATACATCTGAGGATACATTGGATGTTCTAAATGAATGGCTTAATGTGCTTCAGTCGGTTCAGATACCTTTTGCTCTTATTCCCCTTCTGTGTTTAGTGTCCAAGGAGGACATCATGGGTGTCTTTAAAATTGGTCCTCTTCTCAAGACAGTTTCATGGATTGTGGCTGCGTTGGTGATAGTGATCAATGGGTATCTGTTGGTGGATTTCTTCTCTTCGGTAGTAAGCGGAATATTGTTTACTTGCATTGTGTTTGTCTTCACGGCTGCGTATGTTGGGTTTATAGTATACCTTATTTCACGCGAGATTACAGTCTTTATAACTGGCTTGTGGAAACCAAGTGGTTCACAAATCACAAATATAGCAAATTAGTCATTCATTCCTACAAAATTCCATGTCAATTGCACAAGGCTGCCGCATACATCGCAAAGGATATCTTTTGATTATTTGTGCATTCCAAGGATTTTGAATGCCTACTGATTCTGAAGCAATGGCTTATTATACTTTCTTTCCGAGGATGGTAAAGTCGGACTGAGCAAGGCCGTTTACACGTATTTATTTTTCTTGTAAACGATGAATATGAGTG

Network for GWHGAAZE023436

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01566.19	Nramp	12	373	4.00E-123

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K21398	SLC11A2, DMT1, NRAMP2	Lysosome	map04142
		Ferroptosis	map04216
		Mineral absorption	map04978

Gene Ontology

GO term	Ontology	Name
GO:0030001	biological_process	metal ion transport
GO:0016020	cellular_component	membrane
GO:0046873	molecular_function	metal ion transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.324
	SRR3591706	second leaf	16.675
	SRR3591707	mature leaf	26.103
	SRR3591708	Shoot apex	19.467
	SRR3591709	Stem	19.184
	SRR3591710	White floral bud	31.154
	SRR3591711	White flower	46.408
	SRR3591712	Green floral bud	35.767
	SRR3591713	Yellow flower	32.929
SRP173429	SRR8316895	Juvenile bud stage	17.667
	SRR8316896	Juvenile bud stage	19.749
	SRR8316897	Juvenile bud stage	9.640
	SRR8316894	Third green stage	8.470
	SRR8316900	Third green stage	29.857
	SRR8316901	Third green stage	26.573
	SRR8316898	Complete white stage	29.216
	SRR8316899	Complete white stage	44.288
	SRR8316903	Complete white stage	43.551
	SRR8316902	Silver flowering stage	17.948
	SRR8316904	Silver flowering stage	23.061
	SRR8316905	Silver flowering stage	12.115
	SRR8316906	Gold flowering stage	47.088
	SRR8316907	Gold flowering stage	44.146
	SRR8316908	Gold flowering stage	47.116
SRP132670	SRR6706286	Control	28.138
	SRR6706287	Light intensity 50%	20.667
	SRR6706288	Light intensity 20%	21.730
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.212
	CNS0095593	Slightly white alabastrum(diploid) 2	14.168
	CNS0095594	Slightly white alabastrum(diploid) 3	19.415
	CNS0095595	Whole white alabastrum(diploid) 2	17.774
	CNS0095596	Whole white alabastrum(diploid) 3	22.979
	CNS0095597	Whole white alabastrum(diploid) 4	18.760
	CNS0095598	Silvery flower (diploied) 1	24.655
	CNS0095599	Silvery flower (diploied) 2	21.698
	CNS0095600	Silvery flower (diploied) 3	51.420
	CNS0095601	Golden flower (diploid) 1	24.935
	CNS0095602	Golden flower (diploid) 2	40.856
	CNS0095603	Golden flower (diploid) 3	40.224
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.436
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.938
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.835
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.468
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.473
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.452
	CNS0095610	Silvery flower (diploied) 1	40.122
	CNS0095611	Silvery flower (diploied) 2	29.809
	CNS0095612	Silvery flower (diploied) 3	20.086
	CNS0095613	Golden flower (tetraploid) 1	19.639
	CNS0095614	Golden flower (tetraploid) 2	34.914
	CNS0095615	Golden flower (tetraploid) 3	22.589
CRA001975	CRR073297	Stem 1	12.683
	CRR073298	Stem 2	13.368
	CRR073299	Stem 3	14.294
	CRR073300	Leaf 1	16.627
	CRR073301	Leaf 2	13.703
	CRR073302	Leaf 3	13.342
	CRR073303	Juvenile bud 1	21.221
	CRR073304	Juvenile bud 2	38.754
	CRR073305	Juvenile bud 3	26.132
	CRR073306	Third green 1	10.774
	CRR073307	Third green 2	12.820
	CRR073308	Third green 3	11.211
	CRR073309	Second white 1	14.385
	CRR073310	Second white 2	10.940
	CRR073311	Second white 3	12.540
	CRR073312	Silver flowering 1	16.881
	CRR073313	Silver flowering 2	21.891
	CRR073314	Silver flowering 3	15.179
	CRR073315	Gold flowering 1	15.527
	CRR073316	Gold flowering 2	20.554
	CRR073317	Gold flowering 3	21.402
	CRR073318	Tawny withering 1	23.665
	CRR073319	Tawny withering 2	19.937
	CRR073320	Tawny withering 3	11.904