Gene detail

Detail information of GWHGAAZE023462

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006380627.1	0	hypothetical protein POPTR_0007s09950g [Populus trichocarpa]
COG	NP_868627.1	1E-16	protein kinase yloP- serine/threonine protein kinase
Swissprot	tr\|O64816\|CSK2P_ARATH	0	Casein kinase II subunit alpha, chloroplastic (Precursor)
trEMBL	tr\|U5G811\|U5G811_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:ERP58424.1}
TAIR10	AT2G23070.1	4E-151	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	9241975	9246759	+
GWHAAZE00000007	mRNA	9241975	9246759	+
GWHAAZE00000007	exon	9241975	9242093	+
GWHAAZE00000007	exon	9242741	9242870	+
GWHAAZE00000007	exon	9243777	9243983	+
GWHAAZE00000007	exon	9244964	9245136	+
GWHAAZE00000007	exon	9245775	9245865	+
GWHAAZE00000007	exon	9245943	9246073	+
GWHAAZE00000007	exon	9246447	9246510	+
GWHAAZE00000007	exon	9246601	9246759	+
GWHAAZE00000007	CDS	9241975	9242093	+
GWHAAZE00000007	CDS	9242741	9242870	+
GWHAAZE00000007	CDS	9243777	9243983	+
GWHAAZE00000007	CDS	9244964	9245136	+
GWHAAZE00000007	CDS	9245775	9245865	+
GWHAAZE00000007	CDS	9245943	9246073	+
GWHAAZE00000007	CDS	9246447	9246510	+
GWHAAZE00000007	CDS	9246601	9246759	+

Transcript Sequence
>GWHTAAZE023492 AAGATCGGTAAAGCAGTCCGCCGCCCCGGCGCCCCCTCCAAGGCTAGGGTTTACGCCGACATCAATGTCATTCGCCCTAAGGATTATTGGGAATACGAAACCCTAACCGTTCAATGGGGGGACCAGGACGAATATGAGGTTGTCAGGAAAGTTGGAAGGGGAAAATACAGTGAGGTTTTTGAGGGTGTTCATTGTACCGATAACGAGAAATGCGTTATTAAGATCCTTAAGCCTGTGAAGAAGAAGAAAATAAAGAGGGAGATAAAAATACTGCAGAACCTTTGTGGGGGCCCAAACATTGTGAAATTGCTTGACATTGTTAGAGACCAGCAATCAAAGACCCCAAGCCTAATATTTGAATATGTAAATAATACAGATTTCAAAGTGTTATATCCCACACTCTCTGACTTCGACATTCGATATTACATCTATGAGCTTCTAAAGGCGAGCTCCTTGACTTTTTATGTGCAGGCGTTAGATTACTGTCACTCTCAAGGTATAATGCATCGAGATGTGAAGCCCCACAATGTGATGATTGATCATGAGAAGCGTAAGCTTCGTCTTATAGATTGGGGTCTCGCAGAGTTCTATCACCCTGGGAAAGAATATAATGTTCGTGTTGCTTCAAGATATTTCAAAGGGCCGGAACTTCTGGTTGATTTGCAAGACTATGATTACTCCTTAGACTTGTGGAGCCTTGGTTGTATGTTTGCTGGAATGATATTCCGTAAGGAACCGTTTTTCTACGGGCACGATAATTATGATCAACTCGTCAAGATTGCTAAGGTATTTAACATGAGTTACGGGAAGCATATGACACTGCAAAATTTTATTTGTAGTGCTTTAATTACGCATACGAGAAAACCATGGACGAAGTTCATTAGTGCTGAGAATCAACATATAGCTGTCCCTGAGGCGGTTGACTTTCTTGACAAGTTGCTGCGTTATGATCACCAAGAAAGGCCAACAGCAAAAGAAGCAATGGTAATTTCTACATATAACCTCCAATTGCTGCAAACCAACCACACACGTAAACCCCATTCTAGGAAAAAGAAAATGGCAATAAATTCTTAA

Network for GWHGAAZE023462

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	45	328	3.10E-58

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CK2

KEGG pathway

KO	Enzyme	pathway	mapID
K03097	CSNK2A	Ribosome biogenesis in eukaryotes	map03008
		Wnt signaling pathway	map04310
		NF-kappa B signaling pathway	map04064
		Mitophagy - animal	map04137
		Mitophagy - yeast	map04139
		Adherens junction	map04520
		Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	61.027
	SRR3591706	second leaf	45.635
	SRR3591707	mature leaf	37.703
	SRR3591708	Shoot apex	57.915
	SRR3591709	Stem	59.927
	SRR3591710	White floral bud	93.188
	SRR3591711	White flower	76.821
	SRR3591712	Green floral bud	65.192
	SRR3591713	Yellow flower	109.607
SRP173429	SRR8316895	Juvenile bud stage	41.699
	SRR8316896	Juvenile bud stage	63.436
	SRR8316897	Juvenile bud stage	32.998
	SRR8316894	Third green stage	28.383
	SRR8316900	Third green stage	87.383
	SRR8316901	Third green stage	82.441
	SRR8316898	Complete white stage	40.765
	SRR8316899	Complete white stage	98.561
	SRR8316903	Complete white stage	79.055
	SRR8316902	Silver flowering stage	55.189
	SRR8316904	Silver flowering stage	74.300
	SRR8316905	Silver flowering stage	33.367
	SRR8316906	Gold flowering stage	128.167
	SRR8316907	Gold flowering stage	133.637
	SRR8316908	Gold flowering stage	132.818
SRP132670	SRR6706286	Control	43.590
	SRR6706287	Light intensity 50%	44.778
	SRR6706288	Light intensity 20%	43.912
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.448
	CNS0095593	Slightly white alabastrum(diploid) 2	53.892
	CNS0095594	Slightly white alabastrum(diploid) 3	45.452
	CNS0095595	Whole white alabastrum(diploid) 2	52.796
	CNS0095596	Whole white alabastrum(diploid) 3	51.739
	CNS0095597	Whole white alabastrum(diploid) 4	54.422
	CNS0095598	Silvery flower (diploied) 1	56.008
	CNS0095599	Silvery flower (diploied) 2	49.761
	CNS0095600	Silvery flower (diploied) 3	78.938
	CNS0095601	Golden flower (diploid) 1	50.165
	CNS0095602	Golden flower (diploid) 2	82.664
	CNS0095603	Golden flower (diploid) 3	74.453
	CNS0095604	Slightly white alabastrum(tetraploid) 1	59.209
	CNS0095605	Slightly white alabastrum(tetraploid) 2	51.362
	CNS0095606	Slightly white alabastrum(tetraploid) 3	83.767
	CNS0095607	Whole white alabastrum(tetraploid) 1	48.373
	CNS0095608	Whole white alabastrum(tetraploid) 2	50.774
	CNS0095609	Whole white alabastrum(tetraploid) 3	77.983
	CNS0095610	Silvery flower (diploied) 1	77.453
	CNS0095611	Silvery flower (diploied) 2	72.679
	CNS0095612	Silvery flower (diploied) 3	91.795
	CNS0095613	Golden flower (tetraploid) 1	61.146
	CNS0095614	Golden flower (tetraploid) 2	74.215
	CNS0095615	Golden flower (tetraploid) 3	115.100
CRA001975	CRR073297	Stem 1	43.216
	CRR073298	Stem 2	39.800
	CRR073299	Stem 3	36.229
	CRR073300	Leaf 1	49.846
	CRR073301	Leaf 2	47.127
	CRR073302	Leaf 3	46.340
	CRR073303	Juvenile bud 1	38.813
	CRR073304	Juvenile bud 2	40.117
	CRR073305	Juvenile bud 3	55.819
	CRR073306	Third green 1	74.600
	CRR073307	Third green 2	59.867
	CRR073308	Third green 3	60.860
	CRR073309	Second white 1	68.235
	CRR073310	Second white 2	77.166
	CRR073311	Second white 3	78.536
	CRR073312	Silver flowering 1	73.731
	CRR073313	Silver flowering 2	60.188
	CRR073314	Silver flowering 3	51.696
	CRR073315	Gold flowering 1	26.564
	CRR073316	Gold flowering 2	41.254
	CRR073317	Gold flowering 3	28.511
	CRR073318	Tawny withering 1	43.453
	CRR073319	Tawny withering 2	38.127
	CRR073320	Tawny withering 3	39.082