Gene detail

Detail information of GWHGAAZE023471

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009615970.1	5.6509E-169	PREDICTED: mitochondrial outer membrane protein porin 2-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9FJX3\|VDAC2_ARATH	6E-141	Mitochondrial outer membrane protein porin 2
trEMBL	tr\|Q5CZ53\|Q5CZ53_SOLTU	1E-166	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400055247}
TAIR10	AT5G67500.1	9E-113	voltage dependent anion channel 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	9595945	9600150	+
GWHAAZE00000007	mRNA	9595945	9600150	+
GWHAAZE00000007	exon	9595945	9595993	+
GWHAAZE00000007	exon	9596093	9596160	+
GWHAAZE00000007	exon	9597994	9598104	+
GWHAAZE00000007	exon	9598196	9598282	+
GWHAAZE00000007	exon	9598579	9598787	+
GWHAAZE00000007	exon	9599763	9600150	+
GWHAAZE00000007	CDS	9595945	9595993	+
GWHAAZE00000007	CDS	9596093	9596160	+
GWHAAZE00000007	CDS	9597994	9598104	+
GWHAAZE00000007	CDS	9598196	9598282	+
GWHAAZE00000007	CDS	9598579	9598787	+
GWHAAZE00000007	CDS	9599763	9600150	+

Transcript Sequence
>GWHTAAZE023501 ATGAGCAAGGGACCTGGACTTTTCACGGATATTGGCAAGAAAGCCAAAGATCTGCTGACTAGGGACTATATATCGGATCAGAAAATTTCCATCTCGACTTACAGTGATACCGGAGTGGCACTTACATCAACTGCATTGAAGAAAGGAGGACTCTCAACTGGAGATGTTGCAGCACAGTATAAATACAAGAACACTTTAATTGATGTCAAAGTTGATACGGAATCGAATATCTTAACGACACTGACTTTCACTGATATCGTCCCATCGACAAAGACTATTGCTTCATTAAAATTTCCTGACTGCAACTCTGGCAAGCTGGAGGTTCAGTATTTCCATCATCATGCAACTTTTACCTCAGCCATTGCTGCAAAACAATCCCCTGTGATTGATGTTTCAGCTGCCCTTGGTACTCCAACATTTGCACTTGGGGCAGAGGCAGGCTATGAGACCTCTTCCGGTAAATTAACGAAGTATACTGCAGGCATCAGTGTTACAAAACCAGATTCATGTGCTTCAATAGTTTTGGGTTCCTTGCAATTTAACTCGGAAGAAATGATTGGTTATTCCTGTATGGCTCAGCCCCCTCCTCCCTTTCCTTCTTTCAGGGGTGACAAAGGAGACACAATTAGGGCATCATATATACACCATCTCGATCAGTTAAAGAAGAGTGCTGCTGTCGGGGAGATCACTAGAAGGTTTTCGACAAACGAAAATACTTTTACAGTTGGGGGGTGTTATGCCGTTGACAACCTTACGGTGGTGAAAACAAAGCTCAACAATCATGGGAAGTTAGGTGCCCTCTTGCAGCATGAGATCATACCGAAATCGATTCTCACCATCTCTAGTGAGTTTGACACTAAGGCCTTGGATAAGACTCCCAAGTTTGGTGTAGCCCTTGCTCTTAAACCTTGA

Network for GWHGAAZE023471

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01459.23	Porin_3	5	296	1.60E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15040	VDAC2	Calcium signaling pathway	map04020
		cGMP-PKG signaling pathway	map04022
		Ferroptosis	map04216
		Necroptosis	map04217
		Cellular senescence	map04218
		NOD-like receptor signaling pathway	map04621
		Cholesterol metabolism	map04979

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0005741	cellular_component	mitochondrial outer membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	78.483
	SRR3591706	second leaf	69.367
	SRR3591707	mature leaf	61.123
	SRR3591708	Shoot apex	51.487
	SRR3591709	Stem	69.141
	SRR3591710	White floral bud	75.026
	SRR3591711	White flower	110.483
	SRR3591712	Green floral bud	86.480
	SRR3591713	Yellow flower	117.272
SRP173429	SRR8316895	Juvenile bud stage	46.865
	SRR8316896	Juvenile bud stage	76.051
	SRR8316897	Juvenile bud stage	37.965
	SRR8316894	Third green stage	29.479
	SRR8316900	Third green stage	99.571
	SRR8316901	Third green stage	99.506
	SRR8316898	Complete white stage	41.892
	SRR8316899	Complete white stage	92.570
	SRR8316903	Complete white stage	56.117
	SRR8316902	Silver flowering stage	43.671
	SRR8316904	Silver flowering stage	50.256
	SRR8316905	Silver flowering stage	22.215
	SRR8316906	Gold flowering stage	105.145
	SRR8316907	Gold flowering stage	96.532
	SRR8316908	Gold flowering stage	102.714
SRP132670	SRR6706286	Control	73.910
	SRR6706287	Light intensity 50%	75.374
	SRR6706288	Light intensity 20%	83.891
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	67.728
	CNS0095593	Slightly white alabastrum(diploid) 2	65.454
	CNS0095594	Slightly white alabastrum(diploid) 3	72.466
	CNS0095595	Whole white alabastrum(diploid) 2	64.697
	CNS0095596	Whole white alabastrum(diploid) 3	69.563
	CNS0095597	Whole white alabastrum(diploid) 4	63.079
	CNS0095598	Silvery flower (diploied) 1	48.719
	CNS0095599	Silvery flower (diploied) 2	50.141
	CNS0095600	Silvery flower (diploied) 3	72.076
	CNS0095601	Golden flower (diploid) 1	37.372
	CNS0095602	Golden flower (diploid) 2	71.611
	CNS0095603	Golden flower (diploid) 3	70.283
	CNS0095604	Slightly white alabastrum(tetraploid) 1	65.417
	CNS0095605	Slightly white alabastrum(tetraploid) 2	60.815
	CNS0095606	Slightly white alabastrum(tetraploid) 3	68.006
	CNS0095607	Whole white alabastrum(tetraploid) 1	50.630
	CNS0095608	Whole white alabastrum(tetraploid) 2	54.157
	CNS0095609	Whole white alabastrum(tetraploid) 3	74.737
	CNS0095610	Silvery flower (diploied) 1	82.236
	CNS0095611	Silvery flower (diploied) 2	62.919
	CNS0095612	Silvery flower (diploied) 3	63.052
	CNS0095613	Golden flower (tetraploid) 1	73.210
	CNS0095614	Golden flower (tetraploid) 2	74.684
	CNS0095615	Golden flower (tetraploid) 3	95.516
CRA001975	CRR073297	Stem 1	42.101
	CRR073298	Stem 2	40.900
	CRR073299	Stem 3	35.188
	CRR073300	Leaf 1	43.117
	CRR073301	Leaf 2	49.486
	CRR073302	Leaf 3	43.755
	CRR073303	Juvenile bud 1	48.385
	CRR073304	Juvenile bud 2	47.803
	CRR073305	Juvenile bud 3	33.142
	CRR073306	Third green 1	29.615
	CRR073307	Third green 2	27.660
	CRR073308	Third green 3	31.778
	CRR073309	Second white 1	50.599
	CRR073310	Second white 2	49.816
	CRR073311	Second white 3	43.074
	CRR073312	Silver flowering 1	34.935
	CRR073313	Silver flowering 2	36.532
	CRR073314	Silver flowering 3	27.325
	CRR073315	Gold flowering 1	29.190
	CRR073316	Gold flowering 2	39.556
	CRR073317	Gold flowering 3	20.640
	CRR073318	Tawny withering 1	38.897
	CRR073319	Tawny withering 2	50.783
	CRR073320	Tawny withering 3	45.977