Detail information of GWHGAAZE023553


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP11762.10unnamed protein product [Coffea canephora]
COGYP_001655687.13E-11chaperon-like protein for quinone binding in photosystem II
Swissprottr|P52581|IFRH_LUPAL6E-174Isoflavone reductase homolog
trEMBLtr|A0A068UTZ8|A0A068UTZ8_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_59 {ECO:0000313|EMBL:CDP11762.1}
TAIR10AT1G32100.12E-125pinoresinol reductase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene1339164813395778-
GWHAAZE00000007mRNA1339164813395778-
GWHAAZE00000007exon1339164813391811-
GWHAAZE00000007exon1339274413392947-
GWHAAZE00000007exon1339366613393906-
GWHAAZE00000007exon1339544313395778-
GWHAAZE00000007CDS1339544313395778-
GWHAAZE00000007CDS1339366613393906-
GWHAAZE00000007CDS1339274413392947-
GWHAAZE00000007CDS1339164813391811-
Transcript Sequence

Network for GWHGAAZE023553

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05368.14NmrA82441.00E-59
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K21568PLR Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of various secondary metabolites - part 2map00998

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.105
SRR3591706second leaf0.000
SRR3591707mature leaf0.320
SRR3591708Shoot apex0.000
SRR3591709Stem3.920
SRR3591710White floral bud0.321
SRR3591711White flower15.311
SRR3591712Green floral bud0.000
SRR3591713Yellow flower248.344
SRP173429 SRR8316895Juvenile bud stage 0.801
SRR8316896Juvenile bud stage 0.793
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.179
SRR8316900Third green stage 0.540
SRR8316901Third green stage 0.563
SRR8316898Complete white stage 0.224
SRR8316899Complete white stage 0.249
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.078
SRR8316904Silver flowering stage0.255
SRR8316905Silver flowering stage0.561
SRR8316906Gold flowering stage 9.737
SRR8316907Gold flowering stage 19.641
SRR8316908Gold flowering stage 16.503
SRP132670SRR6706286Control0.622
SRR6706287Light intensity 50%0.523
SRR6706288Light intensity 20%0.623
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.155
CNS0095593Slightly white alabastrum(diploid) 20.044
CNS0095594Slightly white alabastrum(diploid) 30.195
CNS0095595Whole white alabastrum(diploid) 20.049
CNS0095596Whole white alabastrum(diploid) 30.463
CNS0095597Whole white alabastrum(diploid) 40.246
CNS0095598Silvery flower (diploied) 10.146
CNS0095599Silvery flower (diploied) 20.075
CNS0095600Silvery flower (diploied) 31.342
CNS0095601Golden flower (diploid) 11.112
CNS0095602Golden flower (diploid) 215.261
CNS0095603Golden flower (diploid) 314.136
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 34.382
CNS0095607Whole white alabastrum(tetraploid) 10.047
CNS0095608Whole white alabastrum(tetraploid) 20.070
CNS0095609Whole white alabastrum(tetraploid) 31.717
CNS0095610Silvery flower (diploied) 13.270
CNS0095611Silvery flower (diploied) 22.209
CNS0095612Silvery flower (diploied) 32.713
CNS0095613Golden flower (tetraploid) 114.621
CNS0095614Golden flower (tetraploid) 214.039
CNS0095615Golden flower (tetraploid) 38.524
CRA001975CRR073297Stem 10.050
CRR073298Stem 20.299
CRR073299Stem 30.235
CRR073300Leaf 10.133
CRR073301Leaf 20.158
CRR073302Leaf 30.254
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.053
CRR073307Third green 20.048
CRR073308Third green 30.000
CRR073309Second white 11.396
CRR073310Second white 22.024
CRR073311Second white 32.319
CRR073312Silver flowering 110.025
CRR073313Silver flowering 26.506
CRR073314Silver flowering 311.310
CRR073315Gold flowering 10.129
CRR073316Gold flowering 20.725
CRR073317Gold flowering 30.817
CRR073318Tawny withering 116.831
CRR073319Tawny withering 22.727
CRR073320Tawny withering 332.968