Gene detail

Detail information of GWHGAAZE023706

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664986.1	0	PREDICTED: histidinol dehydrogenase, chloroplastic isoform X2 [Vitis vinifera]
COG	YP_004320302.1	4E-148	histidinol dehydrogenase
Swissprot	tr\|Q5NAY4\|HISX_ORYSJ	0	Histidinol dehydrogenase, chloroplastic (Precursor)
trEMBL	tr\|F6HW95\|F6HW95_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58959.1}
TAIR10	AT5G63890.2	0	histidinol dehydrogenase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	23320036	23330005	+
GWHAAZE00000007	mRNA	23320036	23330005	+
GWHAAZE00000007	exon	23320036	23320158	+
GWHAAZE00000007	exon	23320266	23320318	+
GWHAAZE00000007	exon	23320465	23320537	+
GWHAAZE00000007	exon	23320787	23320888	+
GWHAAZE00000007	exon	23320995	23321096	+
GWHAAZE00000007	exon	23321216	23321287	+
GWHAAZE00000007	exon	23321375	23321437	+
GWHAAZE00000007	exon	23321561	23321602	+
GWHAAZE00000007	exon	23323856	23323915	+
GWHAAZE00000007	exon	23324055	23324165	+
GWHAAZE00000007	exon	23324892	23325062	+
GWHAAZE00000007	exon	23327296	23327386	+
GWHAAZE00000007	exon	23329728	23330005	+
GWHAAZE00000007	CDS	23320036	23320158	+
GWHAAZE00000007	CDS	23320266	23320318	+
GWHAAZE00000007	CDS	23320465	23320537	+
GWHAAZE00000007	CDS	23320787	23320888	+
GWHAAZE00000007	CDS	23320995	23321096	+
GWHAAZE00000007	CDS	23321216	23321287	+
GWHAAZE00000007	CDS	23321375	23321437	+
GWHAAZE00000007	CDS	23321561	23321602	+
GWHAAZE00000007	CDS	23323856	23323915	+
GWHAAZE00000007	CDS	23324055	23324165	+
GWHAAZE00000007	CDS	23324892	23325062	+
GWHAAZE00000007	CDS	23327296	23327386	+
GWHAAZE00000007	CDS	23329728	23330005	+

Transcript Sequence
>GWHTAAZE023736 TCACTTCGTAATAGAGCTATTAGATGCTCAATGAAGTCTTATAAGCTATCAGAACTCACTAAGGACGAGGTCGACAACCTCAAGGCCCGACCTCGCATCGATTTCTCTTCCATATTCAATATTGTTCAGCCCATTGTTGATGATGTCCGCGTCAAAGGCGATGCCGCTGTTAAAGAATATACTGTACGCTTTGACAAAGTGGAAGTAGACAAGATAGTTGAAAATGTCAATGAACTTCCAGCTGCAGAGCTTGATGCAGCAGTTCGAGAAGCATTTGATGTGGCGTACAACAACATATATGCATTTCATGCTGCCCAAAAGCCGGTTGAGAAAATTGTTGAGAACATGACAGGTGTTAGATGCAAACGTGTGGCAAGGAGCATTTCTTCTGTTGGTCTTTATGTTCCGGGTGGCACTGCCGTTTTACCTTCAACGGCTCTCATGCTCTCAGTTCCTGCACAGATTGCTGGATGTAAAACTGTTGTACTTGCGACTCCTCCTACTAGTGATGGCAGCATCTGTAAGGAGGTACTTTATTGTGCTAAGAAAGCTGGTGTGACCCACATTCTCAAAGCTGGAGGAGCTCAGGCTATTTCTGCAATGGCTTGGGGTACGGCTTCTTGCCCCAAGGTTGAGAAGATATACGGGCCTGGTAATCAGTATGTCACAGCTGCAAAAATGATTCTTCAAAATAGCGAGGCTATGATTTCAATTGACATGCCTGCTGGACCATCAGAAGTGCTTGTCATTGCTGACAAACACGCCAATCCTGTTCATATAGCCGCAGATTTGCTTTCGCAGGCTGAGCATGGTCCCGATAGCCAGGTTGTTCTTGTAGTTGCTGGGGATGGTGTAGATATAAGGGCCATTGAGGAGGAAATAGAAAAGCAATGCAAAAGTCTTCCAAGGGGAGAGTTTGCTTCAAAAGCGCTGACCCACAGCTTCACTGTGTTTGCTCGTGATATGGTTGAGGCTGTTGCCTTTTCAAACTTGTATGCGCCCGAACATCTGATAATAAATGTGAAAGATGCTGAGAAGTGGGAGAGTTTCGTTGAGAATGCAGGTTCGGTATTTCTAGGGCAGTGGACCCCAGAGAGTGTAGGAGACTATGCGAGCGGGACGAACCACGTGCTCCCGACGTATGGTTATGCACGTATGTATGGAGGGGTGTCTTTGGACTCGTTCCTCAAGTACATAACGGTGCAGTCATTGACAGAGGAGGGTCTTAGGAAGCTTGGTCCGTACGTGGCCACCATGGCCGAGGTTGAGGGTCTTGAAGCTCACAAGCGAGCTGTAACCCTCAGACTCCAAGACATTCAAGCAGCTGCTGCAGCCAAATGA

Network for GWHGAAZE023706

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00815.21	Histidinol_dh	30	436	8.00E-160

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00013	hisD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Histidine metabolism	map00340

Gene Ontology

GO term	Ontology	Name
GO:0000105	biological_process	histidine biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0004399	molecular_function	histidinol dehydrogenase activity
GO:0008270	molecular_function	zinc ion binding
GO:0051287	molecular_function	NAD binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.004
	SRR3591706	second leaf	32.518
	SRR3591707	mature leaf	23.702
	SRR3591708	Shoot apex	38.076
	SRR3591709	Stem	20.572
	SRR3591710	White floral bud	23.560
	SRR3591711	White flower	20.792
	SRR3591712	Green floral bud	33.427
	SRR3591713	Yellow flower	23.141
SRP173429	SRR8316895	Juvenile bud stage	26.793
	SRR8316896	Juvenile bud stage	34.282
	SRR8316897	Juvenile bud stage	18.619
	SRR8316894	Third green stage	14.687
	SRR8316900	Third green stage	51.105
	SRR8316901	Third green stage	47.028
	SRR8316898	Complete white stage	19.867
	SRR8316899	Complete white stage	58.844
	SRR8316903	Complete white stage	24.301
	SRR8316902	Silver flowering stage	14.064
	SRR8316904	Silver flowering stage	14.310
	SRR8316905	Silver flowering stage	8.266
	SRR8316906	Gold flowering stage	31.284
	SRR8316907	Gold flowering stage	29.901
	SRR8316908	Gold flowering stage	31.724
SRP132670	SRR6706286	Control	51.343
	SRR6706287	Light intensity 50%	51.421
	SRR6706288	Light intensity 20%	57.512
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.592
	CNS0095593	Slightly white alabastrum(diploid) 2	33.385
	CNS0095594	Slightly white alabastrum(diploid) 3	27.367
	CNS0095595	Whole white alabastrum(diploid) 2	27.941
	CNS0095596	Whole white alabastrum(diploid) 3	34.547
	CNS0095597	Whole white alabastrum(diploid) 4	26.842
	CNS0095598	Silvery flower (diploied) 1	30.014
	CNS0095599	Silvery flower (diploied) 2	30.620
	CNS0095600	Silvery flower (diploied) 3	36.246
	CNS0095601	Golden flower (diploid) 1	29.644
	CNS0095602	Golden flower (diploid) 2	26.873
	CNS0095603	Golden flower (diploid) 3	30.481
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.305
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.686
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.750
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.194
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.094
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.643
	CNS0095610	Silvery flower (diploied) 1	32.150
	CNS0095611	Silvery flower (diploied) 2	36.420
	CNS0095612	Silvery flower (diploied) 3	35.990
	CNS0095613	Golden flower (tetraploid) 1	17.891
	CNS0095614	Golden flower (tetraploid) 2	28.907
	CNS0095615	Golden flower (tetraploid) 3	26.249
CRA001975	CRR073297	Stem 1	46.587
	CRR073298	Stem 2	47.083
	CRR073299	Stem 3	51.541
	CRR073300	Leaf 1	62.787
	CRR073301	Leaf 2	62.693
	CRR073302	Leaf 3	65.315
	CRR073303	Juvenile bud 1	74.586
	CRR073304	Juvenile bud 2	53.534
	CRR073305	Juvenile bud 3	59.053
	CRR073306	Third green 1	27.535
	CRR073307	Third green 2	22.355
	CRR073308	Third green 3	24.492
	CRR073309	Second white 1	27.545
	CRR073310	Second white 2	29.304
	CRR073311	Second white 3	22.591
	CRR073312	Silver flowering 1	22.532
	CRR073313	Silver flowering 2	24.201
	CRR073314	Silver flowering 3	21.879
	CRR073315	Gold flowering 1	40.774
	CRR073316	Gold flowering 2	46.520
	CRR073317	Gold flowering 3	36.947
	CRR073318	Tawny withering 1	35.949
	CRR073319	Tawny withering 2	33.742
	CRR073320	Tawny withering 3	34.508