Gene detail

Detail information of GWHGAAZE023809

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010648347.1	PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Vitis vinifera]
COG	YP_001413397.1	ATP-dependent metalloprotease FtsH
Swissprot	tr\|O80983\|FTSH4_ARATH	ATP-dependent zinc metalloprotease FTSH 4, mitochondrial (Precursor)
trEMBL	tr\|A0A067KQI6\|A0A067KQI6_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP34089.1}
TAIR10	AT2G26140.1	FTSH protease 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	26752716	26762503	+
GWHAAZE00000007	mRNA	26752716	26762503	+
GWHAAZE00000007	exon	26752716	26752903	+
GWHAAZE00000007	exon	26754513	26754600	+
GWHAAZE00000007	exon	26756992	26757252	+
GWHAAZE00000007	exon	26758119	26758364	+
GWHAAZE00000007	exon	26758734	26758858	+
GWHAAZE00000007	exon	26759880	26760356	+
GWHAAZE00000007	exon	26761577	26762503	+
GWHAAZE00000007	five_prime_UTR	26752716	26752876	+
GWHAAZE00000007	CDS	26752877	26752903	+
GWHAAZE00000007	CDS	26754513	26754600	+
GWHAAZE00000007	CDS	26756992	26757252	+
GWHAAZE00000007	CDS	26758119	26758364	+
GWHAAZE00000007	CDS	26758734	26758858	+
GWHAAZE00000007	CDS	26759880	26760356	+
GWHAAZE00000007	CDS	26761577	26762503	+

Transcript Sequence
>GWHTAAZE023839 CTTCAGTCACCATTGATAAATACGGAACCACACAATAATTCACACATACATAACATACGTGTGTACATAAACACGTAGTTTTAGAGATAGAAAGGTCAAAAAAAGTTCAATTTTTAGAGAGAGAGCGAAAAAGATCCAATTCTCGGTCTCTTTTGAAGATAATGGGTCTAAGGCACCTTCTCACCGAGGTTTCAAGGCACCAATCACAGCTTAAGCAATTGAACAATTTATTTGCTCGGTCATATCTCCATTCACAAAAGTTTGGACGTGATGGAGTGAATAGGCTTCCAAGTGCTCAAGGAAGGTTTCAGTCAAGTTATGTAGGCAGTTTATCCCTGAAAGTACGAGATAGGGATGTATCAAACGATGCTGCATATCTTAAAGAGCTCTATCGAAGTGATCCTGAGGCAGTGATTAGATTGTTTGAAAGCCAACCTTCGATACATTCTAACCCTTCAGCACTTGCGGAATATGTTAAGGCCTTGATCAAAGTTGATAGGTTGGATGAAAGTGAGTTGCTTAAGACATTGCAGAGAGGAATTGTGCGTGGTGGTAAGTCAATAGGGGAAGAAGAAAGTATTGGTGGGCTTTCATCTTTAAGGAATGTGGGGAAGTCTACAAAAGAAGGTGTACTTGGAACTCCAAGTGCTCCCATACATATGGTTGCTGCCGAAGGAGGCCATTTCAAGGAACAGTTGTGGCGTACATTAAGGGCTCTGGGCATGGCCTTTCTCTTGATTTCAGGCGTTGGAGCACTTATCGAGGATAGGGGAATAAGTAAAGGACTTGGTCTTAATGAAGAGGTGCAACCGAGCATGGAATCTAGTACAAAGTTTAGTGATGTGAAGGGTGTAGATGAAGCAAAAGCCGAGCTAGAAGAAATTGTTCACTACCTTCGAGACCCTAAGCGCTTCACTCGACTTGGAGGCAAACTCCCAAAGGGCGTTTTGCTTGTGGGTCCACCTGGTACTGGTAAGACTATGTTAGCAAGGGCTATAGCAGGAGAAGCAGGAGTACCTTTCTTCTCGTGTAGCGGCAGTGAATTTGAAGAGATGTTTGTTGGTGTTGGGGCCCGTAGAGTGAGAGACCTTTTCTCCGCCGCCAAAAAACGGTCACCTTGCATAATATTTATGGATGAAATTGATGCCATTGGAGGTAGCCGAAACCCGAAAGACCAACAGTATATGAAGATGACTTTGAATCAGTTGCTTGTTGAACTCGATGGGTTCAAACAAAATGAAGGGATTATAGTGATCGCAGCTACTAATTTCCCCGAATCGTTGGACAAGGCACTGGTGAGACCTGGACGATTTGATCGTCACATCGTTGTTCCCAATCCTGATGTTGAAGGGCGGAGGCAAATTATGGAATCTCACATGTCAAAGGTCCTAAAGGGAGACGATGTGGATCTGATGATAATTGCCAGAGGAACCCCCGGGTTCTCAGGAGCCGATCTTGCAAACTTGGTAAACGTTGCAGCTCTCAAGGCCGCAATGGACGGTGCAAAGGCCGTAAGCATGGCTGATCTCGAATATGCAAAGGACAAGATCATGATGGGCAGCGAACGCAAATCTGCCGTCATTTCAGACGAATCCCGAAAACTAACGGCTTTCCACGAGGGTGGCCACGCCCTTGTTGCCATACACACTGACGGGGCCCTCCCGGTCCACAAGGCAACCATTGTTCCCCGAGGTATGTCCCTTGGCATGGTTGCCCAACTGCCTGACAAAGACGAAACGAGCATTTCCCGTAAGCAAATGCTTGCCCGGCTCGACGTTTGTATGGGTGGGCGGGTAGCTGAAGAGCTTATATTTGGTGAAAGTGAAGTTACTTCAGGTGCCTCTTCGGATTTACAACAAGCAACTAAACTTGCAAGAGCGATGGTTACAAAGTACGGAATGAGCAAGCAAGTAGGAGTGGTTACTCATAACTATGATGATAATGGAAAGAGTATGAGTACTGAAACGAGGCTTCTTATCGAACAGGAAGTTAAAGAAATGTTGGAAACAGCTTACAACAACGCGAAAACTATACTTACAACTCATGGGAAAGAGTTGCACACGCTTGCTAACGCGTTGCTCGAGCACGAGACACTTTCGGGAAATCAGATAAAGACCCTTCTTGCTAAAGTCAACTCTGAGCAGAGTCAACAGCAACAGCAACAGGTGGTTGTACCTCAGGGTACTTCTCAGTCTAGTGCAGTTCCTCCATCAGCACCAAATGCGGCGGCATCGGCGGTAGCAGCGGCTGCGGCTGCTGCAGCTGCCAAGGCTGCAGCCAAGACGAAAGGGATTGCTCCAGTGGGATCTTAG

Network for GWHGAAZE023809

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.30	AAA	262	391	1.20E-43
PF17862.2	AAA_lid_3	414	457	1.00E-10
PF01434.19	Peptidase_M41	473	653	2.00E-66

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08955	YME1	Mitophagy - yeast	map04139

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0016020	cellular_component	membrane
GO:0004222	molecular_function	metalloendopeptidase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.299
	SRR3591706	second leaf	20.825
	SRR3591707	mature leaf	23.822
	SRR3591708	Shoot apex	25.921
	SRR3591709	Stem	23.614
	SRR3591710	White floral bud	33.411
	SRR3591711	White flower	29.438
	SRR3591712	Green floral bud	30.300
	SRR3591713	Yellow flower	25.449
SRP173429	SRR8316895	Juvenile bud stage	24.512
	SRR8316896	Juvenile bud stage	32.850
	SRR8316897	Juvenile bud stage	15.117
	SRR8316894	Third green stage	11.426
	SRR8316900	Third green stage	31.179
	SRR8316901	Third green stage	29.509
	SRR8316898	Complete white stage	23.432
	SRR8316899	Complete white stage	63.783
	SRR8316903	Complete white stage	39.984
	SRR8316902	Silver flowering stage	12.535
	SRR8316904	Silver flowering stage	20.165
	SRR8316905	Silver flowering stage	9.496
	SRR8316906	Gold flowering stage	28.424
	SRR8316907	Gold flowering stage	26.064
	SRR8316908	Gold flowering stage	29.015
SRP132670	SRR6706286	Control	34.557
	SRR6706287	Light intensity 50%	31.258
	SRR6706288	Light intensity 20%	32.834
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.356
	CNS0095593	Slightly white alabastrum(diploid) 2	20.771
	CNS0095594	Slightly white alabastrum(diploid) 3	20.614
	CNS0095595	Whole white alabastrum(diploid) 2	22.984
	CNS0095596	Whole white alabastrum(diploid) 3	14.030
	CNS0095597	Whole white alabastrum(diploid) 4	19.320
	CNS0095598	Silvery flower (diploied) 1	31.058
	CNS0095599	Silvery flower (diploied) 2	25.484
	CNS0095600	Silvery flower (diploied) 3	40.609
	CNS0095601	Golden flower (diploid) 1	28.524
	CNS0095602	Golden flower (diploid) 2	48.713
	CNS0095603	Golden flower (diploid) 3	47.545
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.658
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.783
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.739
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.971
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.050
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.374
	CNS0095610	Silvery flower (diploied) 1	33.526
	CNS0095611	Silvery flower (diploied) 2	33.915
	CNS0095612	Silvery flower (diploied) 3	29.051
	CNS0095613	Golden flower (tetraploid) 1	18.543
	CNS0095614	Golden flower (tetraploid) 2	28.873
	CNS0095615	Golden flower (tetraploid) 3	28.682
CRA001975	CRR073297	Stem 1	44.047
	CRR073298	Stem 2	44.579
	CRR073299	Stem 3	49.305
	CRR073300	Leaf 1	48.804
	CRR073301	Leaf 2	41.763
	CRR073302	Leaf 3	35.037
	CRR073303	Juvenile bud 1	43.393
	CRR073304	Juvenile bud 2	38.120
	CRR073305	Juvenile bud 3	70.274
	CRR073306	Third green 1	24.549
	CRR073307	Third green 2	25.564
	CRR073308	Third green 3	29.944
	CRR073309	Second white 1	22.370
	CRR073310	Second white 2	23.496
	CRR073311	Second white 3	24.212
	CRR073312	Silver flowering 1	24.264
	CRR073313	Silver flowering 2	22.075
	CRR073314	Silver flowering 3	21.765
	CRR073315	Gold flowering 1	30.556
	CRR073316	Gold flowering 2	40.014
	CRR073317	Gold flowering 3	37.912
	CRR073318	Tawny withering 1	30.856
	CRR073319	Tawny withering 2	30.037
	CRR073320	Tawny withering 3	29.767