Gene detail

Detail information of GWHGAAZE023822

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009619439.1	1.7425E-134	PREDICTED: serine/threonine-protein kinase EDR1 [Nicotiana tomentosiformis]
COG	YP_001958461.1	1E-43	hypothetical protein Aasi_1443
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	2E-114	Serine/threonine-protein kinase EDR1
trEMBL	tr\|A0A068UJ13\|A0A068UJ13_COFCA	6E-133	Coffea canephora DH200=94 genomic scaffold, scaffold_31 {ECO:0000313\|EMBL:CDP08257.1}
TAIR10	AT5G11850.1	5E-107	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	27239459	27242575	+
GWHAAZE00000007	mRNA	27239459	27242575	+
GWHAAZE00000007	exon	27239459	27239545	+
GWHAAZE00000007	exon	27239652	27239752	+
GWHAAZE00000007	exon	27240717	27240795	+
GWHAAZE00000007	exon	27240888	27240986	+
GWHAAZE00000007	exon	27241131	27241199	+
GWHAAZE00000007	exon	27241659	27241708	+
GWHAAZE00000007	exon	27241806	27241982	+
GWHAAZE00000007	exon	27242533	27242575	+
GWHAAZE00000007	CDS	27239459	27239545	+
GWHAAZE00000007	CDS	27239652	27239752	+
GWHAAZE00000007	CDS	27240717	27240795	+
GWHAAZE00000007	CDS	27240888	27240986	+
GWHAAZE00000007	CDS	27241131	27241199	+
GWHAAZE00000007	CDS	27241659	27241708	+
GWHAAZE00000007	CDS	27241806	27241982	+
GWHAAZE00000007	CDS	27242533	27242575	+

Transcript Sequence
>GWHTAAZE023852 ATGGGTGTTGAACGACAGGAAGTTGCTGTGAAGAAATTCATGAACCAAGACATCTCTGGTGACGCATTGGTTCAGTTTAAATGCGAGATTGAAATCATGTTACGGTTGAGACATCCTAATGTTGTTCTTTTCATGGGAGCAGTTACTCATCCTCCAAATCTCTCTATATTGACAGAGTTTCTACCAAGGGGGAGTTTATTTAAGCTGTTGCATCGTCCAAATCTCCAACTTGATGAAAAGAGGCGAATGCGGATGGCTCTTGATGTAGCCAAGGGAATGAATTACTTGCACACAAGCAATCCTATTATTGTGCATCGGGATTTGAAGACTCCAAATCTCCTTGTTGATAAGAACTGGGTTGTTAAGGTCTGTGATTTTGGGATGTCACGTATGAAGCACAACACTTTCCTCTCTTCAACGTCCACTGCTGGAACGCCTGAATGGATGGCACCAGAAGTATTGAGGAATGAACGATCTAATGAGAAGGCTGATGTGTACAGCTTTGGTGTAATATTGTGGGAGTTGGCAACTTTGCGGGTGCCGTGGAGTGAGATGAACTCAATGCAGGTTGTAGGAGCTGTTGGATTTCAACACAGACACCTTGATATTCCAGATGACCTTGACCCAATGGTTGCTCAGATAATAATTGATTGTTGGGATCCGTCTAGGAAGGCTAAGGTTTTGCCTAAACTCATAGAGAGTTGA

Network for GWHGAAZE023822

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	5	224	1.30E-55

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL_CTR1-DRK-2

KEGG pathway

KO	Enzyme	pathway	mapID
K04424	ZAK, MLTK	MAPK signaling pathway	map04010

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.359
	SRR3591706	second leaf	8.240
	SRR3591707	mature leaf	11.646
	SRR3591708	Shoot apex	5.603
	SRR3591709	Stem	20.846
	SRR3591710	White floral bud	20.437
	SRR3591711	White flower	25.528
	SRR3591712	Green floral bud	13.789
	SRR3591713	Yellow flower	26.045
SRP173429	SRR8316895	Juvenile bud stage	5.606
	SRR8316896	Juvenile bud stage	6.218
	SRR8316897	Juvenile bud stage	6.970
	SRR8316894	Third green stage	4.215
	SRR8316900	Third green stage	9.899
	SRR8316901	Third green stage	8.589
	SRR8316898	Complete white stage	5.121
	SRR8316899	Complete white stage	11.347
	SRR8316903	Complete white stage	10.134
	SRR8316902	Silver flowering stage	9.032
	SRR8316904	Silver flowering stage	13.721
	SRR8316905	Silver flowering stage	5.928
	SRR8316906	Gold flowering stage	23.254
	SRR8316907	Gold flowering stage	21.166
	SRR8316908	Gold flowering stage	31.166
SRP132670	SRR6706286	Control	9.605
	SRR6706287	Light intensity 50%	10.394
	SRR6706288	Light intensity 20%	10.041
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.267
	CNS0095593	Slightly white alabastrum(diploid) 2	8.654
	CNS0095594	Slightly white alabastrum(diploid) 3	8.857
	CNS0095595	Whole white alabastrum(diploid) 2	7.898
	CNS0095596	Whole white alabastrum(diploid) 3	6.805
	CNS0095597	Whole white alabastrum(diploid) 4	7.164
	CNS0095598	Silvery flower (diploied) 1	12.485
	CNS0095599	Silvery flower (diploied) 2	11.505
	CNS0095600	Silvery flower (diploied) 3	20.758
	CNS0095601	Golden flower (diploid) 1	11.405
	CNS0095602	Golden flower (diploid) 2	18.547
	CNS0095603	Golden flower (diploid) 3	21.115
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.002
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.747
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.687
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.782
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.056
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.548
	CNS0095610	Silvery flower (diploied) 1	36.646
	CNS0095611	Silvery flower (diploied) 2	31.408
	CNS0095612	Silvery flower (diploied) 3	33.719
	CNS0095613	Golden flower (tetraploid) 1	29.466
	CNS0095614	Golden flower (tetraploid) 2	31.107
	CNS0095615	Golden flower (tetraploid) 3	29.517
CRA001975	CRR073297	Stem 1	12.176
	CRR073298	Stem 2	11.017
	CRR073299	Stem 3	9.134
	CRR073300	Leaf 1	14.428
	CRR073301	Leaf 2	14.441
	CRR073302	Leaf 3	12.040
	CRR073303	Juvenile bud 1	12.892
	CRR073304	Juvenile bud 2	11.829
	CRR073305	Juvenile bud 3	13.048
	CRR073306	Third green 1	14.399
	CRR073307	Third green 2	11.801
	CRR073308	Third green 3	12.796
	CRR073309	Second white 1	11.710
	CRR073310	Second white 2	19.609
	CRR073311	Second white 3	16.820
	CRR073312	Silver flowering 1	12.471
	CRR073313	Silver flowering 2	8.689
	CRR073314	Silver flowering 3	10.083
	CRR073315	Gold flowering 1	4.177
	CRR073316	Gold flowering 2	7.395
	CRR073317	Gold flowering 3	4.216
	CRR073318	Tawny withering 1	8.950
	CRR073319	Tawny withering 2	12.744
	CRR073320	Tawny withering 3	8.606