Gene detail

Detail information of GWHGAAZE023827

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010526154.1	1.2371E-132	PREDICTED: calcineurin B-like protein 10 isoform X2 [Tarenaya hassleriana]
Swissprot	tr\|Q7FRS8\|CNBLA_ARATH	5E-128	Calcineurin B-like protein 10
trEMBL	tr\|V4L4H4\|V4L4H4_EUTSA	1E-128	Uncharacterized protein {ECO:0000313\|EMBL:ESQ38534.1}
TAIR10	AT4G33000.2	2E-99	calcineurin B-like protein 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	27360343	27366650	-
GWHAAZE00000007	mRNA	27360343	27366650	-
GWHAAZE00000007	exon	27366639	27366650	-
GWHAAZE00000007	exon	27366373	27366550	-
GWHAAZE00000007	exon	27366197	27366279	-
GWHAAZE00000007	exon	27365168	27365227	-
GWHAAZE00000007	exon	27362074	27362182	-
GWHAAZE00000007	exon	27361903	27361955	-
GWHAAZE00000007	exon	27361308	27361388	-
GWHAAZE00000007	exon	27360846	27360958	-
GWHAAZE00000007	exon	27360343	27360605	-
GWHAAZE00000007	CDS	27366639	27366650	-
GWHAAZE00000007	CDS	27366373	27366550	-
GWHAAZE00000007	CDS	27366197	27366279	-
GWHAAZE00000007	CDS	27365168	27365227	-
GWHAAZE00000007	CDS	27362074	27362182	-
GWHAAZE00000007	CDS	27361903	27361955	-
GWHAAZE00000007	CDS	27361308	27361388	-
GWHAAZE00000007	CDS	27360846	27360958	-
GWHAAZE00000007	CDS	27360551	27360605	-
GWHAAZE00000007	three_prime_UTR	27360343	27360550	-

Transcript Sequence
>GWHTAAZE023857 ATGGAATCCTCGACATCGAGTTCATTGAGCGTAGCTGAGCGGCTCTGTTTTGTTGTAATTCCATTTATCGCAATGATTGAAGTTCTGGTATCCGCTGTTTCCGGTTGTTTTGATTGCCGACGACTCCAAAGACCTAAGAAAATAAAATGCAGATACGGAGATCTCGCACGACTAGCCGGCGAATCTCGATTTACTGTTAATGAAGTGGAGGCATTGTTCGAGTTGTTTAAGAAGTTGAGTAGTTCAATTATCGACGATGGATTATTACACAAGGAAGAGCTTCAGTTAGCGCTTTTCAAGAGTCCATATGGTGAGAATCTTTTCCTGGACCGGGTTTTCGATCTTTTTGATGAAAAGAAGAATGGCGTCATTGAATTCGAGGAATTTGTTCATGCTCTCAGCATCTTCCATCCCAATGCTCCTTTGGAAGAGAAAATAGACTTTTCATTTAGGCTTTACGATCTGAGACAAACTGGGTTCATTGAGCGAGAAGAAGTTAGGGAAATGGTTGTTGCAATTTTAACAGAATCTGACATGAAGCTGACCGACGAACTCGTCGAGGCTATTATTGATAAGACGTTTGTTGAGGCGGATACTGATGGTGATGGTAGGATCTCTATAGACGAATGGAAGGCTTTTGTTTCTCGTCATCCGGCCCTCTTGAAGAACATGACTCTTCCTTATCTTACGGACATCACCACAGCATATCCAAGTTTTATTTTCAACACTGTGGTTGAAGATTGAGATTTGGAAGCCATTTTTTCCTCCCAAAAAGGAATATTTATTGTGGAATGCACGTACAAGAAAATTTAGAAGAAATCGAATTGTGGTTGGAGTTTGGCACATTCCTGTAATTTAAACTAGCGTGTTGAAAGGTGAGTAGTTTAAATTGAATTTAGTTTGATTAGAGAGAGAGAAAGAGAGAAAAGGGGACAGTTCAATTGAATTTAGT

Network for GWHGAAZE023827

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00036.33	EF-hand_1	109	134	4.90E-06
PF13499.7	EF-hand_7	143	214	1.80E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06268	PPP3R, CNB	MAPK signaling pathway	map04010
		Wnt signaling pathway	map04310
		VEGF signaling pathway	map04370
		Calcium signaling pathway	map04020
		cGMP-PKG signaling pathway	map04022
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		C-type lectin receptor signaling pathway	map04625
		Natural killer cell mediated cytotoxicity	map04650
		T cell receptor signaling pathway	map04660
		Th1 and Th2 cell differentiation	map04658
		Th17 cell differentiation	map04659
		B cell receptor signaling pathway	map04662
		Glucagon signaling pathway	map04922
		Oxytocin signaling pathway	map04921
		Renin secretion	map04924
		Glutamatergic synapse	map04724
		Long-term potentiation	map04720
		Axon guidance	map04360
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.430
	SRR3591706	second leaf	6.552
	SRR3591707	mature leaf	7.435
	SRR3591708	Shoot apex	8.354
	SRR3591709	Stem	8.008
	SRR3591710	White floral bud	4.607
	SRR3591711	White flower	5.781
	SRR3591712	Green floral bud	4.596
	SRR3591713	Yellow flower	4.473
SRP173429	SRR8316895	Juvenile bud stage	6.401
	SRR8316896	Juvenile bud stage	6.513
	SRR8316897	Juvenile bud stage	4.622
	SRR8316894	Third green stage	1.949
	SRR8316900	Third green stage	5.610
	SRR8316901	Third green stage	5.330
	SRR8316898	Complete white stage	11.702
	SRR8316899	Complete white stage	5.950
	SRR8316903	Complete white stage	14.045
	SRR8316902	Silver flowering stage	10.404
	SRR8316904	Silver flowering stage	10.923
	SRR8316905	Silver flowering stage	3.268
	SRR8316906	Gold flowering stage	9.361
	SRR8316907	Gold flowering stage	10.662
	SRR8316908	Gold flowering stage	8.455
SRP132670	SRR6706286	Control	2.788
	SRR6706287	Light intensity 50%	3.328
	SRR6706288	Light intensity 20%	2.896
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.513
	CNS0095593	Slightly white alabastrum(diploid) 2	8.556
	CNS0095594	Slightly white alabastrum(diploid) 3	4.652
	CNS0095595	Whole white alabastrum(diploid) 2	5.959
	CNS0095596	Whole white alabastrum(diploid) 3	4.047
	CNS0095597	Whole white alabastrum(diploid) 4	4.114
	CNS0095598	Silvery flower (diploied) 1	8.704
	CNS0095599	Silvery flower (diploied) 2	9.718
	CNS0095600	Silvery flower (diploied) 3	11.084
	CNS0095601	Golden flower (diploid) 1	6.143
	CNS0095602	Golden flower (diploid) 2	4.635
	CNS0095603	Golden flower (diploid) 3	5.574
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.288
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.604
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.038
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.984
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.136
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.522
	CNS0095610	Silvery flower (diploied) 1	12.717
	CNS0095611	Silvery flower (diploied) 2	9.135
	CNS0095612	Silvery flower (diploied) 3	25.078
	CNS0095613	Golden flower (tetraploid) 1	6.714
	CNS0095614	Golden flower (tetraploid) 2	8.690
	CNS0095615	Golden flower (tetraploid) 3	5.081
CRA001975	CRR073297	Stem 1	4.302
	CRR073298	Stem 2	4.914
	CRR073299	Stem 3	2.417
	CRR073300	Leaf 1	3.818
	CRR073301	Leaf 2	2.282
	CRR073302	Leaf 3	2.061
	CRR073303	Juvenile bud 1	1.238
	CRR073304	Juvenile bud 2	3.462
	CRR073305	Juvenile bud 3	2.454
	CRR073306	Third green 1	9.590
	CRR073307	Third green 2	10.826
	CRR073308	Third green 3	8.379
	CRR073309	Second white 1	7.646
	CRR073310	Second white 2	9.972
	CRR073311	Second white 3	6.835
	CRR073312	Silver flowering 1	3.890
	CRR073313	Silver flowering 2	1.289
	CRR073314	Silver flowering 3	3.891
	CRR073315	Gold flowering 1	1.694
	CRR073316	Gold flowering 2	1.591
	CRR073317	Gold flowering 3	1.043
	CRR073318	Tawny withering 1	3.787
	CRR073319	Tawny withering 2	4.193
	CRR073320	Tawny withering 3	4.147