Gene detail

Detail information of GWHGAAZE023881

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006353617.1	4.0296E-123	PREDICTED: adenylate kinase 2, chloroplastic-like isoform X1 [Solanum tuberosum]
COG	YP_003640733.1	3E-51	adenylate kinase
Swissprot	tr\|Q9FIJ7\|KAD2_ARATH	2E-118	Adenylate kinase 2, chloroplastic (Precursor)
trEMBL	tr\|B9MWG0\|B9MWG0_POPTR	4E-122	Uncharacterized protein {ECO:0000313\|EMBL:ERP53933.1}
TAIR10	AT5G47840.1	6E-95	adenosine monophosphate kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	28657682	28668927	+
GWHAAZE00000007	mRNA	28657682	28668927	+
GWHAAZE00000007	exon	28657682	28657939	+
GWHAAZE00000007	exon	28659861	28659959	+
GWHAAZE00000007	exon	28661291	28661419	+
GWHAAZE00000007	exon	28661536	28661670	+
GWHAAZE00000007	exon	28668399	28668545	+
GWHAAZE00000007	exon	28668712	28668786	+
GWHAAZE00000007	exon	28668910	28668927	+
GWHAAZE00000007	CDS	28657682	28657939	+
GWHAAZE00000007	CDS	28659861	28659959	+
GWHAAZE00000007	CDS	28661291	28661419	+
GWHAAZE00000007	CDS	28661536	28661670	+
GWHAAZE00000007	CDS	28668399	28668545	+
GWHAAZE00000007	CDS	28668712	28668786	+
GWHAAZE00000007	CDS	28668910	28668927	+

Transcript Sequence
>GWHTAAZE023913 ATGGCTTGCAGCAGTTCATTGAACTTCCCCGTGGTATCATCAAAGCCAAACCCAAAACCTCCTCCTCCGACAACTTCATTATCCAATAGTTATAAAAATTATCCTTCTTCATCTTCATCATCTTCCCCTAAACTTCACCTCAGTTCACTCTCATTATCAGCAACGTCTGTCTTTTTCAGCCCCTTTCTCAGTCATGATCGAAACCTAATTCGGCAACGTTTCTCCCGGAATTCGTCACCCGACTATCGGAATTTCGAGGTTGTGGCATCGGGGAATAAACAAGTGCCGCTGAAGATTATGATATCTGGGGCACCTGCTTCTGGTAAAGGAACACAATGTGAGCTCATCACTAAGAAATATGGGTTGGTGCATATTGCTGCTGGAGACTTATTGAGAACAGAAATTGCAGCGGGGACTGAAAATGGGAAGCGAGCAAAGGAATACATGGAGAAAGGGCAGCTGGTTCCAAACGAAATAGTGGTCATGATGGTGAAGGACCGGTTATCACAACCAGATTCTGAAGAAAAGGGTTGGCTTTTGGATGGATACCCTAGAAGCTCATCTCAAGCAACAGCTCTTAGAGAATTGGGGTTCCATCCAGACCTTTTTATTCTTCTTGAAGTCCCTGAAGATATCCTTATTGAGAGAGTAGTTGGCCGTAGGTTAGATCCTGTTACTGGGAAAATATATCACTTGAAGTATTCTCCCCCAGAAACTGAGGAAATTGCGGCTAGGCTTACCCAACGTTTTGACGACACAGAAGAGAAGGTGAAGCTTCGTTTGCAAACTCATCATCAGAATGTGGAGTCAGTGCTCTCGTTGTTTGGGGATATAATAGTCAAGGTTGGGGTCATTATCTAG

Network for GWHGAAZE023881

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00406.23	ADK	101	275	3.70E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00939	adk, AK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Purine metabolism	map00230
		Thiamine metabolism	map00730

Gene Ontology

GO term	Ontology	Name
GO:0006139	biological_process	nucleobase-containing compound metabolic process
GO:0004017	molecular_function	adenylate kinase activity
GO:0005524	molecular_function	ATP binding
GO:0019205	molecular_function	nucleobase-containing compound kinase activity
GO:0016776	molecular_function	phosphotransferase activity, phosphate group as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	71.199
	SRR3591706	second leaf	127.431
	SRR3591707	mature leaf	84.322
	SRR3591708	Shoot apex	93.376
	SRR3591709	Stem	56.176
	SRR3591710	White floral bud	56.236
	SRR3591711	White flower	73.326
	SRR3591712	Green floral bud	64.228
	SRR3591713	Yellow flower	90.034
SRP173429	SRR8316895	Juvenile bud stage	70.118
	SRR8316896	Juvenile bud stage	75.982
	SRR8316897	Juvenile bud stage	35.129
	SRR8316894	Third green stage	29.188
	SRR8316900	Third green stage	97.930
	SRR8316901	Third green stage	88.294
	SRR8316898	Complete white stage	45.262
	SRR8316899	Complete white stage	127.412
	SRR8316903	Complete white stage	52.209
	SRR8316902	Silver flowering stage	40.821
	SRR8316904	Silver flowering stage	47.780
	SRR8316905	Silver flowering stage	26.350
	SRR8316906	Gold flowering stage	107.426
	SRR8316907	Gold flowering stage	96.212
	SRR8316908	Gold flowering stage	113.797
SRP132670	SRR6706286	Control	86.501
	SRR6706287	Light intensity 50%	81.468
	SRR6706288	Light intensity 20%	92.155
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	53.566
	CNS0095593	Slightly white alabastrum(diploid) 2	54.191
	CNS0095594	Slightly white alabastrum(diploid) 3	47.124
	CNS0095595	Whole white alabastrum(diploid) 2	68.189
	CNS0095596	Whole white alabastrum(diploid) 3	50.215
	CNS0095597	Whole white alabastrum(diploid) 4	60.846
	CNS0095598	Silvery flower (diploied) 1	61.576
	CNS0095599	Silvery flower (diploied) 2	59.466
	CNS0095600	Silvery flower (diploied) 3	106.597
	CNS0095601	Golden flower (diploid) 1	62.339
	CNS0095602	Golden flower (diploid) 2	99.180
	CNS0095603	Golden flower (diploid) 3	92.145
	CNS0095604	Slightly white alabastrum(tetraploid) 1	53.085
	CNS0095605	Slightly white alabastrum(tetraploid) 2	63.032
	CNS0095606	Slightly white alabastrum(tetraploid) 3	97.957
	CNS0095607	Whole white alabastrum(tetraploid) 1	40.899
	CNS0095608	Whole white alabastrum(tetraploid) 2	42.102
	CNS0095609	Whole white alabastrum(tetraploid) 3	72.658
	CNS0095610	Silvery flower (diploied) 1	89.802
	CNS0095611	Silvery flower (diploied) 2	117.454
	CNS0095612	Silvery flower (diploied) 3	95.648
	CNS0095613	Golden flower (tetraploid) 1	67.605
	CNS0095614	Golden flower (tetraploid) 2	90.749
	CNS0095615	Golden flower (tetraploid) 3	126.346
CRA001975	CRR073297	Stem 1	77.024
	CRR073298	Stem 2	72.170
	CRR073299	Stem 3	68.856
	CRR073300	Leaf 1	67.878
	CRR073301	Leaf 2	55.527
	CRR073302	Leaf 3	73.764
	CRR073303	Juvenile bud 1	71.679
	CRR073304	Juvenile bud 2	73.988
	CRR073305	Juvenile bud 3	53.882
	CRR073306	Third green 1	64.985
	CRR073307	Third green 2	40.273
	CRR073308	Third green 3	47.073
	CRR073309	Second white 1	76.223
	CRR073310	Second white 2	66.311
	CRR073311	Second white 3	56.280
	CRR073312	Silver flowering 1	53.364
	CRR073313	Silver flowering 2	54.363
	CRR073314	Silver flowering 3	51.117
	CRR073315	Gold flowering 1	78.436
	CRR073316	Gold flowering 2	99.040
	CRR073317	Gold flowering 3	82.287
	CRR073318	Tawny withering 1	48.910
	CRR073319	Tawny withering 2	39.723
	CRR073320	Tawny withering 3	59.560