Detail information of GWHGAAZE023957


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003598968.11.05886E-13E3 ubiquitin-protein ligase RNF181 [Medicago truncatula]
Swissprottr|Q8GXF8|SHGR9_ARATH1E-12E3 ubiquitin-protein ligase SGR9, amyloplastic (Precursor)
trEMBLtr|G7IZ98|G7IZ98_MEDTR4E-14Anaphase-promoting complex subunit 11 RING-H2 finger protein {ECO:0000313|EMBL:AES69219.1}
TAIR10AT5G08139.11E-12RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene3052692930527588-
GWHAAZE00000007mRNA3052692930527588-
GWHAAZE00000007exon3052692930527588-
GWHAAZE00000007CDS3052692930527588-
Transcript Sequence

Network for GWHGAAZE023957

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21622041.00E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud12.001
SRR3591711White flower0.909
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 1.228
SRR8316899Complete white stage 0.069
SRR8316903Complete white stage 0.672
SRR8316902Silver flowering stage0.592
SRR8316904Silver flowering stage0.460
SRR8316905Silver flowering stage0.411
SRR8316906Gold flowering stage 0.044
SRR8316907Gold flowering stage 0.139
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.019
SRR6706287Light intensity 50%0.047
SRR6706288Light intensity 20%0.000
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.406
CNS0095600Silvery flower (diploied) 31.509
CNS0095601Golden flower (diploid) 10.074
CNS0095602Golden flower (diploid) 20.122
CNS0095603Golden flower (diploid) 30.338
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.066
CNS0095608Whole white alabastrum(tetraploid) 20.108
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (diploied) 10.353
CNS0095611Silvery flower (diploied) 20.430
CNS0095612Silvery flower (diploied) 34.402
CNS0095613Golden flower (tetraploid) 10.294
CNS0095614Golden flower (tetraploid) 20.142
CNS0095615Golden flower (tetraploid) 30.093
CRA001975CRR073297Stem 10.000
CRR073298Stem 20.000
CRR073299Stem 30.000
CRR073300Leaf 10.000
CRR073301Leaf 20.000
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.181
CRR073305Juvenile bud 30.000
CRR073306Third green 18.732
CRR073307Third green 29.014
CRR073308Third green 36.218
CRR073309Second white 10.504
CRR073310Second white 21.292
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000