Detail information of GWHGAAZE023958


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003598968.12.19512E-13E3 ubiquitin-protein ligase RNF181 [Medicago truncatula]
Swissprottr|Q8GXF8|SHGR9_ARATH2E-12E3 ubiquitin-protein ligase SGR9, amyloplastic (Precursor)
trEMBLtr|G7IZ98|G7IZ98_MEDTR8E-14Anaphase-promoting complex subunit 11 RING-H2 finger protein {ECO:0000313|EMBL:AES69219.1}
TAIR10AT5G08139.12E-12RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene3053414330534802-
GWHAAZE00000007mRNA3053414330534802-
GWHAAZE00000007exon3053414330534802-
GWHAAZE00000007CDS3053414330534802-
Transcript Sequence

Network for GWHGAAZE023958

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21622041.70E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud7.510
SRR3591711White flower0.244
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 0.629
SRR8316899Complete white stage 0.009
SRR8316903Complete white stage 0.637
SRR8316902Silver flowering stage0.670
SRR8316904Silver flowering stage0.515
SRR8316905Silver flowering stage0.762
SRR8316906Gold flowering stage 0.109
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.015
SRR6706287Light intensity 50%0.089
SRR6706288Light intensity 20%0.020
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.591
CNS0095599Silvery flower (diploied) 20.345
CNS0095600Silvery flower (diploied) 30.943
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.134
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.066
CNS0095608Whole white alabastrum(tetraploid) 20.282
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (diploied) 10.226
CNS0095611Silvery flower (diploied) 20.193
CNS0095612Silvery flower (diploied) 32.292
CNS0095613Golden flower (tetraploid) 10.113
CNS0095614Golden flower (tetraploid) 20.115
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.000
CRR073298Stem 20.000
CRR073299Stem 30.000
CRR073300Leaf 10.000
CRR073301Leaf 20.000
CRR073302Leaf 30.248
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.125
CRR073305Juvenile bud 30.000
CRR073306Third green 119.658
CRR073307Third green 29.328
CRR073308Third green 311.746
CRR073309Second white 11.894
CRR073310Second white 21.595
CRR073311Second white 30.421
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000