Gene detail

Detail information of GWHGAAZE024065

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284499.2	0	PREDICTED: chlorophyllide a oxygenase, chloroplastic [Vitis vinifera]
COG	NP_489047.1	3E-32	hypothetical protein alr5007
Swissprot	tr\|Q8S7E1\|CAO_ORYSJ	0	Chlorophyllide a oxygenase, chloroplastic (Precursor)
trEMBL	tr\|F6H0L1\|F6H0L1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45483.1}
TAIR10	AT1G44446.1	0	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	34187644	34194993	+
GWHAAZE00000007	mRNA	34187644	34194993	+
GWHAAZE00000007	exon	34187644	34187889	+
GWHAAZE00000007	exon	34188525	34188629	+
GWHAAZE00000007	exon	34189896	34190180	+
GWHAAZE00000007	exon	34191688	34191835	+
GWHAAZE00000007	exon	34192229	34192413	+
GWHAAZE00000007	exon	34192512	34192624	+
GWHAAZE00000007	exon	34194102	34194396	+
GWHAAZE00000007	exon	34194823	34194993	+
GWHAAZE00000007	CDS	34187644	34187889	+
GWHAAZE00000007	CDS	34188525	34188629	+
GWHAAZE00000007	CDS	34189896	34190180	+
GWHAAZE00000007	CDS	34191688	34191835	+
GWHAAZE00000007	CDS	34192229	34192413	+
GWHAAZE00000007	CDS	34192512	34192624	+
GWHAAZE00000007	CDS	34194102	34194396	+
GWHAAZE00000007	CDS	34194823	34194993	+

Transcript Sequence
>GWHTAAZE024099 ATGGAATCTCAGGGTGTTAGAGGAGTTAGGGTTTTTGCTATACTTGGGGAGGAAGATGAGTTGGTGGACAAGAAAAGCCAATGGAGTGCCCTCTTCAATGTAGAAGATCCGAGGTCTAAAGTCCCACAGGTCAAAGGGAAATTCTTGGATGCAAATCAAGCTCTAGAAGTGGCTAGATACGATATACAGTACTGCGATTGGCGAGCTCGGCAAGATCTTCTGACAATCATGCTCATTCATGACAAGGTTGTGGATGTACTAAACCCTCTCGCCCGTGAGTACAAATCCATTGGCACCGTAAAGAAGGAGCTTGCGGAATTGCAACAAGAGTTGTCACAAGCTCATAAACAGGTACATATATCTGAAGCAAGGGTTTCTGCTGCTGTAGATAAGCTAGCTTTCATGGAAGAATTGGTTAACGATAAGCTGTTACAAGACAGAAAAGCAACGGATTCGAATAGCACATCACCCCCTTCACCCAGTAGTACTTCTGCTGAATATCTCGAAACAGTGAACAGAAAGACGCCACCTCGGAAAATGCTGAATGTGTCTGGTCCAGTCCAACATTACCATCCCCGTTTGATGAACTTTTGGTACCCCGTCGCTTTCTCTAATGACCTCAAGGATGATACCATGATCCCAATTGATTGTTTTGAAAAACCGTGGGTAATGTTTCGTGGGAAAGATGGAAAACCTGGATGTGTAAGGAACACCTGCGCACATAGAGCATGCCCTCTTGACTTAGGTTCGGTGAATGAGGGTCGCATTCAATGTCCTTACCATGGTTGGGAATACTCAACAGATGGAAAATGCGAGAAAATGCCTTCAACAAAATTCGTAAATGTCAAGATAAAAGCTTTGCCGTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGCAATGACCCTCCAACAGCCACCATTCCTTCTTTACAACCTCCTCAGGGATTTAAAATACACGCGGAGCTTGTGATGGAACTTCCAGTTGAACATGGGCTACTATTGGACAACCTTTTGGATCTTGCGCATGCTCCTTTCACTCATACTTCCACCTTTGCTAAGGGATGGGGTGTTCCAAGCTTGGTGAAATTTTTGACACCTGCGTCTGGCCTCCAAGGATACTGGGACCCTTATCCAATAGATATGGAATTCCGACCACCTTGTATAGTGTTATCAACCATTGGAATTTCGAAGCCGGGGAAACTAGAGGGGCAGAGCACCAAGCAGTGCTCTACACACCTTCACCAACTGCATGTTTGCTTACCTTCATCCAGAGGGAAAACAAGGCTATTGTACAGAATGTCATTGGATTTCGCCCCCGTTCTACAGTACATACCTTTTATGCAGTATTTGTGGAGGCATTTTGCAGAAAAGGTTTTGAATGAGGACCTGAGGCTCGTACTGGGCCAACAGGACCGTATGATCAATGGTGCAAACATTTGGAATTGGCCAGTATCCTATGATAAGCTAGGAGTAAGGTACAGATTATGGAGAGATGCTGTGGAGCGAGGAGTTAAACAGTTGCCCTTCACAAATTCAAATTAG

Network for GWHGAAZE024065

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00355.27	Rieske	198	278	9.90E-22
PF19112.1	VanA_C	331	355	4.40E-05
PF08417.13	PaO	385	478	9.10E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13600	CAO	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0051537	molecular_function	2 iron, 2 sulfur cluster binding
GO:0010277	molecular_function	chlorophyllide a oxygenase [overall] activity
GO:0005506	molecular_function	iron ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.120
	SRR3591706	second leaf	106.737
	SRR3591707	mature leaf	76.667
	SRR3591708	Shoot apex	44.865
	SRR3591709	Stem	35.265
	SRR3591710	White floral bud	18.892
	SRR3591711	White flower	48.176
	SRR3591712	Green floral bud	7.357
	SRR3591713	Yellow flower	27.721
SRP173429	SRR8316895	Juvenile bud stage	9.356
	SRR8316896	Juvenile bud stage	9.611
	SRR8316897	Juvenile bud stage	5.713
	SRR8316894	Third green stage	4.451
	SRR8316900	Third green stage	11.564
	SRR8316901	Third green stage	10.418
	SRR8316898	Complete white stage	8.695
	SRR8316899	Complete white stage	14.041
	SRR8316903	Complete white stage	12.360
	SRR8316902	Silver flowering stage	12.802
	SRR8316904	Silver flowering stage	13.845
	SRR8316905	Silver flowering stage	8.099
	SRR8316906	Gold flowering stage	14.930
	SRR8316907	Gold flowering stage	12.334
	SRR8316908	Gold flowering stage	14.497
SRP132670	SRR6706286	Control	18.919
	SRR6706287	Light intensity 50%	13.259
	SRR6706288	Light intensity 20%	13.036
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.288
	CNS0095593	Slightly white alabastrum(diploid) 2	4.934
	CNS0095594	Slightly white alabastrum(diploid) 3	5.646
	CNS0095595	Whole white alabastrum(diploid) 2	4.229
	CNS0095596	Whole white alabastrum(diploid) 3	3.842
	CNS0095597	Whole white alabastrum(diploid) 4	4.460
	CNS0095598	Silvery flower (diploied) 1	21.122
	CNS0095599	Silvery flower (diploied) 2	17.122
	CNS0095600	Silvery flower (diploied) 3	51.482
	CNS0095601	Golden flower (diploid) 1	21.553
	CNS0095602	Golden flower (diploid) 2	39.727
	CNS0095603	Golden flower (diploid) 3	37.851
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.206
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.872
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.679
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.419
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.827
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.536
	CNS0095610	Silvery flower (diploied) 1	47.779
	CNS0095611	Silvery flower (diploied) 2	65.811
	CNS0095612	Silvery flower (diploied) 3	11.710
	CNS0095613	Golden flower (tetraploid) 1	16.239
	CNS0095614	Golden flower (tetraploid) 2	27.207
	CNS0095615	Golden flower (tetraploid) 3	6.472
CRA001975	CRR073297	Stem 1	12.326
	CRR073298	Stem 2	13.073
	CRR073299	Stem 3	17.495
	CRR073300	Leaf 1	11.266
	CRR073301	Leaf 2	12.022
	CRR073302	Leaf 3	11.473
	CRR073303	Juvenile bud 1	13.580
	CRR073304	Juvenile bud 2	10.852
	CRR073305	Juvenile bud 3	14.174
	CRR073306	Third green 1	10.674
	CRR073307	Third green 2	11.457
	CRR073308	Third green 3	9.744
	CRR073309	Second white 1	8.971
	CRR073310	Second white 2	8.239
	CRR073311	Second white 3	8.602
	CRR073312	Silver flowering 1	7.620
	CRR073313	Silver flowering 2	7.578
	CRR073314	Silver flowering 3	8.178
	CRR073315	Gold flowering 1	28.865
	CRR073316	Gold flowering 2	29.250
	CRR073317	Gold flowering 3	23.360
	CRR073318	Tawny withering 1	12.957
	CRR073319	Tawny withering 2	9.119
	CRR073320	Tawny withering 3	15.528