Gene detail

Detail information of GWHGAAZE024077

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008219616.1	0	PREDICTED: aldehyde dehydrogenase family 3 member H1 isoform X1 [Prunus mume]
COG	YP_007068020.1	1E-154	aldehyde dehydrogenase
Swissprot	tr\|Q70DU8\|AL3H1_ARATH	0	Aldehyde dehydrogenase family 3 member H1
trEMBL	tr\|M5XBG8\|M5XBG8_PRUPE	0	Aldehyde dehydrogenase {ECO:0000256\|PIRNR:PIRNR036492}
TAIR10	AT1G44170.2	0	aldehyde dehydrogenase 3H1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	34375195	34384137	+
GWHAAZE00000007	mRNA	34375195	34384137	+
GWHAAZE00000007	exon	34375195	34375422	+
GWHAAZE00000007	exon	34378839	34378907	+
GWHAAZE00000007	exon	34379229	34379325	+
GWHAAZE00000007	exon	34380965	34381171	+
GWHAAZE00000007	exon	34381805	34381920	+
GWHAAZE00000007	exon	34382023	34382127	+
GWHAAZE00000007	exon	34382948	34383120	+
GWHAAZE00000007	exon	34383243	34383333	+
GWHAAZE00000007	exon	34383601	34383750	+
GWHAAZE00000007	exon	34383898	34384137	+
GWHAAZE00000007	CDS	34375195	34375422	+
GWHAAZE00000007	CDS	34378839	34378907	+
GWHAAZE00000007	CDS	34379229	34379325	+
GWHAAZE00000007	CDS	34380965	34381171	+
GWHAAZE00000007	CDS	34381805	34381920	+
GWHAAZE00000007	CDS	34382023	34382127	+
GWHAAZE00000007	CDS	34382948	34383120	+
GWHAAZE00000007	CDS	34383243	34383333	+
GWHAAZE00000007	CDS	34383601	34383750	+
GWHAAZE00000007	CDS	34383898	34384137	+

Transcript Sequence
>GWHTAAZE024111 ATGGCGGCGCCGAACGGGAAGAATGGGGAGGTGTTCGACGGAGAAGCGGCGAGGTTGGTGGTGAATGAGCTGAGAGCGACGGTGTCTACGGGGAAGACGAAGAGCTACGAGTGGAGAGTATCGCAGTTGAAAAGTTTGATTAAATTCAGTGAAGAACACGAGATGGAGATTGTTGATGCTCTTCGTTCCGATCTATCTAAACCTGAATTTGAATCCTTCGTTCAAGAGATTTCTATGGTCAAGAGCTCCTGTAAGCTGGCATTGAAGGAACTAAAAAATTGGATGAAGCCGGAAAAGGCTAAAACTTCAATTACAACTTTCCCTTCATCAGCAGAAATTGTATCAGAACCCTTTGGTGTCATTTTGATCATAGGAGCATGGAACTATCCTTTCATGTTATCTCTTGATCCACTCATTGGAGCTATTGCAGCTGGGAATGCTGTGGTTTTAAAACCGTCAGAAGTATCCCCAAAAACATCATCATTGCTTGCTAAATATTTAGGGGAATATATGGATAACTCGGCAATAAAAGTTGTTGAGGGTGCTGTTCCTGAAACATCCGCACTGCTGGAGCAAAAGTGGGATAAAATATTATATACAGGGAATGGAAAAGTGGGGCGTATCGTCTTGGCTGCTGCAGCAAAGCATCTTACACCAGTAATATTGGAGCTTGGAGGAAAATCCCCTGTTGTTGTTGATTCAAACATTAACTTAAAGGTTGCGACCAGGCGTATTATTGCAGGCAAGTGGGGGTGCAATAACGGACAAGCTTGTGTTTCTCCTGATTACATTATAACCACAAAAGAGTATGCTCCAAAGTTGGTAGATTCTTTGAAAACTGAGTTGACCAAATTCTATGGGGAGGATCCCTTGTATTCAGAAGATTTGTCTCGCATTGTGAATTCCAACCACTATGCTCGCTTAACAAATCTATTGGACGATGAGAAGGTTTCGGGTAAGATAGTTCATGGAGGTCAAAGAGACAAAGCCGAAGTAAGGATTGCTCCCACTATTTTGCTTGATGTGCCAGAAGATTCTTTGATCATGAATGAGGAGATATTCGGTCCTTTACTTCCAATTATCACGGTTGACAAAGTGGAAGACAGTTTTTATGTGATAAATACAAGGCCAAAGCCGCTTGCAGCATACTTGTTCACCAACAACAAGAAGCTAGAGGAGGATTTCGTGAGAAATGTCTCTGCCGGGGGCTTACTCATTAACGATACTACTATGCATCTCGCGGTCCCCGGTTTACCATTTGGTGGAGTTGGTGAAAGCGGAATGGGCTCATACCATGGTAAATTTTCATTTGATGCGTTTAGTCACAAGAAGGCGATTTTGCACCGAAGCTTTGCCTGTGATGTATCTGCAAGGTACCCTCCATACACACCTGGAAAGCTAAATTTGCTCAAGGCTCTTCTAAATGGCAATATACTAGGCATTATTCGTGCTTTATTCGGTTTGTCTAAGGTTTAA

Network for GWHGAAZE024077

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00171.23	Aldedh	31	445	1.10E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00128	ALDH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Ascorbate and aldarate metabolism	map00053
		Pyruvate metabolism	map00620
		Fatty acid degradation	map00071
		Glycerolipid metabolism	map00561
		Valine, leucine and isoleucine degradation	map00280
		Lysine degradation	map00310
		Arginine and proline metabolism	map00330
		Histidine metabolism	map00340
		Tryptophan metabolism	map00380
		beta-Alanine metabolism	map00410
		Insect hormone biosynthesis	map00981
		Limonene and pinene degradation	map00903
		Chloroalkane and chloroalkene degradation	map00625

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006081	biological_process	cellular aldehyde metabolic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.687
	SRR3591706	second leaf	0.059
	SRR3591707	mature leaf	0.355
	SRR3591708	Shoot apex	0.327
	SRR3591709	Stem	0.601
	SRR3591710	White floral bud	0.339
	SRR3591711	White flower	0.525
	SRR3591712	Green floral bud	0.164
	SRR3591713	Yellow flower	0.084
SRP173429	SRR8316895	Juvenile bud stage	0.252
	SRR8316896	Juvenile bud stage	0.370
	SRR8316897	Juvenile bud stage	0.122
	SRR8316894	Third green stage	0.121
	SRR8316900	Third green stage	0.268
	SRR8316901	Third green stage	0.383
	SRR8316898	Complete white stage	0.353
	SRR8316899	Complete white stage	0.757
	SRR8316903	Complete white stage	0.500
	SRR8316902	Silver flowering stage	1.593
	SRR8316904	Silver flowering stage	1.566
	SRR8316905	Silver flowering stage	0.708
	SRR8316906	Gold flowering stage	1.071
	SRR8316907	Gold flowering stage	0.271
	SRR8316908	Gold flowering stage	0.768
SRP132670	SRR6706286	Control	0.186
	SRR6706287	Light intensity 50%	0.158
	SRR6706288	Light intensity 20%	0.258
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.554
	CNS0095593	Slightly white alabastrum(diploid) 2	0.619
	CNS0095594	Slightly white alabastrum(diploid) 3	1.144
	CNS0095595	Whole white alabastrum(diploid) 2	0.279
	CNS0095596	Whole white alabastrum(diploid) 3	0.012
	CNS0095597	Whole white alabastrum(diploid) 4	0.476
	CNS0095598	Silvery flower (diploied) 1	0.465
	CNS0095599	Silvery flower (diploied) 2	0.834
	CNS0095600	Silvery flower (diploied) 3	0.673
	CNS0095601	Golden flower (diploid) 1	0.283
	CNS0095602	Golden flower (diploid) 2	0.332
	CNS0095603	Golden flower (diploid) 3	0.521
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.093
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.173
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.037
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.406
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.271
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.677
	CNS0095611	Silvery flower (diploied) 2	0.396
	CNS0095612	Silvery flower (diploied) 3	0.613
	CNS0095613	Golden flower (tetraploid) 1	0.710
	CNS0095614	Golden flower (tetraploid) 2	0.429
	CNS0095615	Golden flower (tetraploid) 3	0.343
CRA001975	CRR073297	Stem 1	0.126
	CRR073298	Stem 2	0.044
	CRR073299	Stem 3	0.134
	CRR073300	Leaf 1	0.293
	CRR073301	Leaf 2	0.177
	CRR073302	Leaf 3	0.086
	CRR073303	Juvenile bud 1	1.013
	CRR073304	Juvenile bud 2	0.142
	CRR073305	Juvenile bud 3	0.211
	CRR073306	Third green 1	2.104
	CRR073307	Third green 2	2.982
	CRR073308	Third green 3	2.963
	CRR073309	Second white 1	0.326
	CRR073310	Second white 2	0.145
	CRR073311	Second white 3	0.084
	CRR073312	Silver flowering 1	0.094
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.175
	CRR073316	Gold flowering 2	0.391
	CRR073317	Gold flowering 3	0.469
	CRR073318	Tawny withering 1	15.369
	CRR073319	Tawny withering 2	2.689
	CRR073320	Tawny withering 3	17.686