Detail information of GWHGAAZE024097


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010664176.10PREDICTED: protein translocase subunit SECA2, chloroplastic isoform X2 [Vitis vinifera]
COGYP_007146025.12E-16WD40 repeat-containing protein
Swissprottr|Q8L828|COB23_ARATH4E-10Coatomer subunit beta'-3
trEMBLtr|F6H0I6|F6H0I6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB45458.1}
TAIR10AT1G21650.38E-153Preprotein translocase SecA family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene3478156234786920-
GWHAAZE00000007mRNA3478156234786920-
GWHAAZE00000007exon3478156234781813-
GWHAAZE00000007exon3478246934782741-
GWHAAZE00000007exon3478414334784198-
GWHAAZE00000007exon3478520134786920-
GWHAAZE00000007CDS3478520134786920-
GWHAAZE00000007CDS3478414334784198-
GWHAAZE00000007CDS3478246934782741-
GWHAAZE00000007CDS3478156234781813-
Transcript Sequence

Network for GWHGAAZE024097

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0228GO:0000808 origin recognition complex GOslim:cellular_component
GO:0005643 nuclear pore GOslim:cellular_component
map03030 DNA replication
GO:0017056 structural constituent of nuclear pore GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13445.7zf-RING_UBOX24664.40E-07
PF00400.33WD405605900.06
PF00400.33WD406907200.0038
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.631
SRR3591706second leaf0.502
SRR3591707mature leaf1.003
SRR3591708Shoot apex1.010
SRR3591709Stem1.676
SRR3591710White floral bud1.651
SRR3591711White flower1.422
SRR3591712Green floral bud1.057
SRR3591713Yellow flower1.736
SRP173429 SRR8316895Juvenile bud stage 2.120
SRR8316896Juvenile bud stage 2.626
SRR8316897Juvenile bud stage 2.300
SRR8316894Third green stage 1.557
SRR8316900Third green stage 3.930
SRR8316901Third green stage 2.967
SRR8316898Complete white stage 1.260
SRR8316899Complete white stage 4.534
SRR8316903Complete white stage 2.733
SRR8316902Silver flowering stage1.274
SRR8316904Silver flowering stage2.954
SRR8316905Silver flowering stage1.174
SRR8316906Gold flowering stage 4.823
SRR8316907Gold flowering stage 4.185
SRR8316908Gold flowering stage 6.893
SRP132670SRR6706286Control1.748
SRR6706287Light intensity 50%1.847
SRR6706288Light intensity 20%1.717
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.254
CNS0095593Slightly white alabastrum(diploid) 21.188
CNS0095594Slightly white alabastrum(diploid) 31.589
CNS0095595Whole white alabastrum(diploid) 21.228
CNS0095596Whole white alabastrum(diploid) 31.216
CNS0095597Whole white alabastrum(diploid) 41.679
CNS0095598Silvery flower (diploied) 12.478
CNS0095599Silvery flower (diploied) 22.054
CNS0095600Silvery flower (diploied) 34.363
CNS0095601Golden flower (diploid) 12.035
CNS0095602Golden flower (diploid) 24.906
CNS0095603Golden flower (diploid) 33.566
CNS0095604Slightly white alabastrum(tetraploid) 12.855
CNS0095605Slightly white alabastrum(tetraploid) 22.037
CNS0095606Slightly white alabastrum(tetraploid) 37.662
CNS0095607Whole white alabastrum(tetraploid) 12.186
CNS0095608Whole white alabastrum(tetraploid) 22.232
CNS0095609Whole white alabastrum(tetraploid) 34.690
CNS0095610Silvery flower (diploied) 17.746
CNS0095611Silvery flower (diploied) 28.794
CNS0095612Silvery flower (diploied) 37.379
CNS0095613Golden flower (tetraploid) 13.388
CNS0095614Golden flower (tetraploid) 25.738
CNS0095615Golden flower (tetraploid) 34.961
CRA001975CRR073297Stem 12.173
CRR073298Stem 22.062
CRR073299Stem 31.216
CRR073300Leaf 12.747
CRR073301Leaf 21.604
CRR073302Leaf 31.128
CRR073303Juvenile bud 11.176
CRR073304Juvenile bud 21.102
CRR073305Juvenile bud 31.332
CRR073306Third green 10.374
CRR073307Third green 20.263
CRR073308Third green 30.902
CRR073309Second white 10.582
CRR073310Second white 20.474
CRR073311Second white 31.522
CRR073312Silver flowering 10.382
CRR073313Silver flowering 20.443
CRR073314Silver flowering 30.583
CRR073315Gold flowering 10.729
CRR073316Gold flowering 22.819
CRR073317Gold flowering 30.569
CRR073318Tawny withering 11.440
CRR073319Tawny withering 21.018
CRR073320Tawny withering 30.633