Gene detail

Detail information of GWHGAAZE024258

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN03705.1	4.2997E-131	Putative F-actin-capping protein subunit beta [Glycine soja]
Swissprot	tr\|Q9M9G7\|CAPZB_ARATH	9E-119	Probable F-actin-capping protein subunit beta
trEMBL	tr\|I3T7I6\|I3T7I6_LOTJA	1E-126	Uncharacterized protein {ECO:0000313\|EMBL:AFK48478.1}
TAIR10	AT1G71790.1	2E-90	Subunits of heterodimeric actin filament capping protein Capz superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	38703366	38708855	+
GWHAAZE00000007	mRNA	38703366	38708855	+
GWHAAZE00000007	exon	38703366	38703494	+
GWHAAZE00000007	exon	38704772	38704842	+
GWHAAZE00000007	exon	38705174	38705287	+
GWHAAZE00000007	exon	38705466	38705548	+
GWHAAZE00000007	exon	38705633	38705706	+
GWHAAZE00000007	exon	38707384	38707479	+
GWHAAZE00000007	exon	38708607	38708855	+
GWHAAZE00000007	CDS	38703366	38703494	+
GWHAAZE00000007	CDS	38704772	38704842	+
GWHAAZE00000007	CDS	38705174	38705287	+
GWHAAZE00000007	CDS	38705466	38705548	+
GWHAAZE00000007	CDS	38705633	38705706	+
GWHAAZE00000007	CDS	38707384	38707479	+
GWHAAZE00000007	CDS	38708607	38708699	+
GWHAAZE00000007	three_prime_UTR	38708700	38708855	+

Transcript Sequence
>GWHTAAZE024292 ATGGAGGCAGCAATGGGATTAATGAGAAGAATACCACCGAAGCACATAGAGACGGCCCTCTCCGCTCTCTTAGGCCTCTTGCCTGACCACGCCACCGATCTCCTCTCTCAAGTCGATCAACCTCTTCAGGTCTTATGTGATGTGGACAATGGGAGGGAGTTCATATTGTGTGAATACAACAGAGATGCTGACTCTTATAGATCACCTTGGTCAAATAAGTATCATCCACCATTGGAAGACGGGTGTCTTCCATCTCCAGAGTTGAGGAAACTTGAAGTTGAAGCAAATGATATATTTGGAGTTTATCGTGACCACTATTACGAAGGTGGGATTTCATCTGTCTATATTTGGGAAGATTTGACCGATGGTTTTGTAGCTTGTTTTTTGATTAAGAAAGATGGTTCCAGGTCTGGACATGGTAGACGAGGTTATCTGCAGGAAGGAGCTTGGGAAGCCATACACGTTATTCAGATGAATATGAACCTGGCAATGACAGATGGTCATTTATGTAACATGGGCAAGATGATTGAAGAAATGGAGGGTAAGCTGAGAAATTCGCTAGATCAGGTTTATTTCGGGAAAACAAAAGAGATGGTCTGCATTTTGCGTCCGCCTCGTGAGCTCTTGCCTGAAGAATTGCCTGAAAACAGAAAGATCTGAGGGATGATACCCTGTTTGTTATAACTCATGCACAATGCTCGTTTGTTTTTTCTCCTTTTATCAAATTTTTTGTGATATTACTTTCGGGGTTTTCTTTTAAATTTTTTTTTTCTAGTATGCCTCATTATCCATATTCATTATAAAAATTTGTTATTC

Network for GWHGAAZE024258

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01115.18	F_actin_cap_B	1	160	5.80E-62
PF01115.18	F_actin_cap_B	161	199	1.10E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10365	CAPZB	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0030036	biological_process	actin cytoskeleton organization
GO:0051016	biological_process	barbed-end actin filament capping
GO:0005737	cellular_component	cytoplasm
GO:0008290	cellular_component	F-actin capping protein complex
GO:0003779	molecular_function	actin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.293
	SRR3591706	second leaf	2.357
	SRR3591707	mature leaf	1.853
	SRR3591708	Shoot apex	4.729
	SRR3591709	Stem	7.958
	SRR3591710	White floral bud	4.441
	SRR3591711	White flower	5.547
	SRR3591712	Green floral bud	6.854
	SRR3591713	Yellow flower	3.375
SRP173429	SRR8316895	Juvenile bud stage	2.387
	SRR8316896	Juvenile bud stage	6.512
	SRR8316897	Juvenile bud stage	5.832
	SRR8316894	Third green stage	2.475
	SRR8316900	Third green stage	6.289
	SRR8316901	Third green stage	5.711
	SRR8316898	Complete white stage	1.532
	SRR8316899	Complete white stage	3.146
	SRR8316903	Complete white stage	1.623
	SRR8316902	Silver flowering stage	1.679
	SRR8316904	Silver flowering stage	2.237
	SRR8316905	Silver flowering stage	0.894
	SRR8316906	Gold flowering stage	3.946
	SRR8316907	Gold flowering stage	1.903
	SRR8316908	Gold flowering stage	3.322
SRP132670	SRR6706286	Control	3.559
	SRR6706287	Light intensity 50%	3.984
	SRR6706288	Light intensity 20%	3.706
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.763
	CNS0095593	Slightly white alabastrum(diploid) 2	7.507
	CNS0095594	Slightly white alabastrum(diploid) 3	9.206
	CNS0095595	Whole white alabastrum(diploid) 2	6.083
	CNS0095596	Whole white alabastrum(diploid) 3	9.318
	CNS0095597	Whole white alabastrum(diploid) 4	8.392
	CNS0095598	Silvery flower (diploied) 1	3.051
	CNS0095599	Silvery flower (diploied) 2	2.048
	CNS0095600	Silvery flower (diploied) 3	2.688
	CNS0095601	Golden flower (diploid) 1	2.447
	CNS0095602	Golden flower (diploid) 2	1.290
	CNS0095603	Golden flower (diploid) 3	1.568
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.096
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.138
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.816
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.397
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.885
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.992
	CNS0095610	Silvery flower (diploied) 1	2.980
	CNS0095611	Silvery flower (diploied) 2	3.764
	CNS0095612	Silvery flower (diploied) 3	3.187
	CNS0095613	Golden flower (tetraploid) 1	3.862
	CNS0095614	Golden flower (tetraploid) 2	3.421
	CNS0095615	Golden flower (tetraploid) 3	1.611
CRA001975	CRR073297	Stem 1	3.208
	CRR073298	Stem 2	2.556
	CRR073299	Stem 3	3.443
	CRR073300	Leaf 1	3.846
	CRR073301	Leaf 2	3.769
	CRR073302	Leaf 3	2.120
	CRR073303	Juvenile bud 1	2.355
	CRR073304	Juvenile bud 2	1.216
	CRR073305	Juvenile bud 3	0.594
	CRR073306	Third green 1	0.971
	CRR073307	Third green 2	1.645
	CRR073308	Third green 3	0.781
	CRR073309	Second white 1	1.611
	CRR073310	Second white 2	2.362
	CRR073311	Second white 3	1.144
	CRR073312	Silver flowering 1	1.263
	CRR073313	Silver flowering 2	0.579
	CRR073314	Silver flowering 3	0.780
	CRR073315	Gold flowering 1	0.458
	CRR073316	Gold flowering 2	0.379
	CRR073317	Gold flowering 3	0.196
	CRR073318	Tawny withering 1	1.226
	CRR073319	Tawny withering 2	2.447
	CRR073320	Tawny withering 3	1.826