Gene detail

Detail information of GWHGAAZE024301

Functional Annotation

Database	Orthologs	Annotation
Nr	ACN40181.1	unknown [Picea sitchensis]
Swissprot	tr\|P33629\|TBA_PRUDU	Tubulin alpha chain
trEMBL	tr\|F6H5R4\|F6H5R4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47535.1}
TAIR10	AT1G50010.1	tubulin alpha-2 chain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	39633367	39636564	-
GWHAAZE00000007	mRNA	39633367	39636564	-
GWHAAZE00000007	exon	39636472	39636564	-
GWHAAZE00000007	exon	39635935	39636169	-
GWHAAZE00000007	exon	39634198	39634568	-
GWHAAZE00000007	exon	39633367	39634071	-
GWHAAZE00000007	CDS	39636472	39636564	-
GWHAAZE00000007	CDS	39635935	39636169	-
GWHAAZE00000007	CDS	39634198	39634568	-
GWHAAZE00000007	CDS	39633418	39634071	-
GWHAAZE00000007	three_prime_UTR	39633367	39633417	-

Transcript Sequence
>GWHTAAZE024335 ATGAGGGAGTGCATCTCGATTCACATTGGACAGGCCGGTATTCAGGTTGGAAACGCCTGCTGGGAGCTCTACTGCCTTGAACATGGCATTCAGCCTGATGGACAAATGCCAAGTGACAAGACTGTGGGCGGCGGAGATGATGCTTTCAATACCTTCTTCAGTGAAACCGGAGCTGGAAAGCATGTTCCCAGAGCTGTATTCGTGGATTTGGAGCCGACCGTTATAGATGAAGTGAGGACCGGAACTTACAGACAATTGTTCCACCCCGAGCAGCTCATTAGTGGCAAAGAAGATGCCGCTAATAACTTTGCTAGAGGCCATTACACAATTGGGAAAGAAATTGTGGACTTGTGCCTGGATAGGATTAGGAAATTGGCTGATAACTGCACTGGGCTTCAAGGGTTCTTGGTTTTCCATGCTGTTGGTGGTGGTACTGGCTCTGGCCTTGGATCTCTTCTTCTTGAAAGGCTTTCTGTGGACTACGGAAAGAAATCAAAGCTTGGGTTTACAGTTTACCCTTCTCCTCAGGTCTCAACATCTGTGGTTGAGCCTTACAACTCTGTTCTATCAACTCACTCGCTTCTTGAGCACACTGATGTTTCTGTGCTCCTCGACAATGAAGCTATCTACGATATCTGTCGTAAATCTCTTGATATTGAAAGACCCACTTACACTAACCTCAACAGGCTTGTCTCCCAGGTCATTTCTTCGCTAACAGCCTCTCTCCGATTCGATGGAGCGCTAAATGTGGATGTAACTGAGTTCCAGACTAATTTGGTCCCATACCCAAGAATCCATTTTATGCTTTCTTCATATGCACCTGTTATATCAGCTGAAAAGGCCTACCATGAGCAACTCTCTGTTGCTGAAATCACAAACAGCGCATTTGAGCCCTCGTCTATGATGGCTAAATGCGATCCTCGACATGGGAAATACATGGCTTGCTGTTTGATGTACAGGGGTGATGTAGTTCCGAAAGATGTGAACGCTGCTGTGGCCACCATCAAGACCAAGAGGACCATTCAGTTTGTGGACTGGTGCCCAACTGGGTTCAAGTGTGGGATCAACTACCAGCCACCCACTGTGGTGCCTGGTGGGGACTTGGCCAATGTTCAGAGGGCAGTTTGTATGATATCCAACTCGACCAGCGTTGCTGAGGTGTTCTCGAGGATCGATCATAAGTTTGATTTGATGTATGCGAAGAGAGCGTTTGTGCATTGGTATGTTGGTGAAGGTATGGAGGAAGGGGAGTTTTCAGAGGCTAGAGAGGACTTGGCTGCACTTGAGAAGGATTATGAGGAAGTTGGACTTGAATCTGCAGAAGGGGAAGAAGATGATGGTGAAGAGTACTAGATAAGAGAGTAGTGGTGCGTAAGGTTGTTGCTTTTGTTTTTGAAACCGGAA

Network for GWHGAAZE024301

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00091.26	Tubulin	3	213	1.60E-68
PF03953.18	Tubulin_C	263	392	2.30E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07374	TUBA	Phagosome	map04145
		Apoptosis	map04210
		Tight junction	map04530
		Gap junction	map04540

Gene Ontology

GO term	Ontology	Name
GO:0007017	biological_process	microtubule-based process
GO:0005874	cellular_component	microtubule
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity
GO:0005200	molecular_function	structural constituent of cytoskeleton

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	94.287
	SRR3591706	second leaf	26.001
	SRR3591707	mature leaf	2.297
	SRR3591708	Shoot apex	248.179
	SRR3591709	Stem	42.555
	SRR3591710	White floral bud	4.671
	SRR3591711	White flower	2.127
	SRR3591712	Green floral bud	9.508
	SRR3591713	Yellow flower	0.256
SRP173429	SRR8316895	Juvenile bud stage	33.573
	SRR8316896	Juvenile bud stage	31.414
	SRR8316897	Juvenile bud stage	18.478
	SRR8316894	Third green stage	9.669
	SRR8316900	Third green stage	10.052
	SRR8316901	Third green stage	7.368
	SRR8316898	Complete white stage	6.141
	SRR8316899	Complete white stage	4.309
	SRR8316903	Complete white stage	14.707
	SRR8316902	Silver flowering stage	18.863
	SRR8316904	Silver flowering stage	19.958
	SRR8316905	Silver flowering stage	13.283
	SRR8316906	Gold flowering stage	8.021
	SRR8316907	Gold flowering stage	6.975
	SRR8316908	Gold flowering stage	1.375
SRP132670	SRR6706286	Control	7.752
	SRR6706287	Light intensity 50%	7.456
	SRR6706288	Light intensity 20%	10.774
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.069
	CNS0095593	Slightly white alabastrum(diploid) 2	27.554
	CNS0095594	Slightly white alabastrum(diploid) 3	21.360
	CNS0095595	Whole white alabastrum(diploid) 2	6.057
	CNS0095596	Whole white alabastrum(diploid) 3	2.956
	CNS0095597	Whole white alabastrum(diploid) 4	3.958
	CNS0095598	Silvery flower (diploied) 1	13.745
	CNS0095599	Silvery flower (diploied) 2	15.292
	CNS0095600	Silvery flower (diploied) 3	8.303
	CNS0095601	Golden flower (diploid) 1	4.834
	CNS0095602	Golden flower (diploid) 2	5.097
	CNS0095603	Golden flower (diploid) 3	4.611
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.129
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.896
	CNS0095606	Slightly white alabastrum(tetraploid) 3	60.120
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.278
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.003
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.717
	CNS0095610	Silvery flower (diploied) 1	0.699
	CNS0095611	Silvery flower (diploied) 2	3.817
	CNS0095612	Silvery flower (diploied) 3	1.778
	CNS0095613	Golden flower (tetraploid) 1	0.298
	CNS0095614	Golden flower (tetraploid) 2	0.333
	CNS0095615	Golden flower (tetraploid) 3	0.138
CRA001975	CRR073297	Stem 1	64.525
	CRR073298	Stem 2	65.692
	CRR073299	Stem 3	122.192
	CRR073300	Leaf 1	10.362
	CRR073301	Leaf 2	10.333
	CRR073302	Leaf 3	12.613
	CRR073303	Juvenile bud 1	5.324
	CRR073304	Juvenile bud 2	2.093
	CRR073305	Juvenile bud 3	6.381
	CRR073306	Third green 1	45.804
	CRR073307	Third green 2	66.216
	CRR073308	Third green 3	57.530
	CRR073309	Second white 1	3.430
	CRR073310	Second white 2	1.503
	CRR073311	Second white 3	0.497
	CRR073312	Silver flowering 1	0.179
	CRR073313	Silver flowering 2	0.204
	CRR073314	Silver flowering 3	0.205
	CRR073315	Gold flowering 1	3.191
	CRR073316	Gold flowering 2	4.629
	CRR073317	Gold flowering 3	7.565
	CRR073318	Tawny withering 1	139.015
	CRR073319	Tawny withering 2	99.821
	CRR073320	Tawny withering 3	140.419