Gene detail

Detail information of GWHGAAZE024484

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010065337.1	7.6168E-150	PREDICTED: TMV resistance protein N-like [Eucalyptus grandis]
COG	YP_004449090.1	2E-27	adenylate cyclase
Swissprot	tr\|O23530\|SNC1_ARATH	7E-58	Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1
trEMBL	tr\|A0A059CLH0\|A0A059CLH0_EUCGR	3E-112	Uncharacterized protein {ECO:0000313\|EMBL:KCW79079.1}
TAIR10	AT1G69550.1	4E-63	disease resistance protein (TIR-NBS-LRR class)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	43455160	43458666	+
GWHAAZE00000007	mRNA	43455160	43458666	+
GWHAAZE00000007	exon	43455160	43455786	+
GWHAAZE00000007	exon	43456388	43456696	+
GWHAAZE00000007	exon	43456792	43458666	+
GWHAAZE00000007	CDS	43455160	43455786	+
GWHAAZE00000007	CDS	43456388	43456696	+
GWHAAZE00000007	CDS	43456792	43458666	+

Transcript Sequence
>GWHTAAZE024518 GTTTTGGTTTCACTTGAAGCCGTTAGTCGACAAAAAGGTCTACTTGATGTTTTTAGGAGTTATAAAGTACCTCCAATGAAGCCTGACGATTCCCTTCAACTATTTAGTAGGTACGCCTTTATGAGGGATTCTCCTAAAGAAGGGTACCTCAGCCTTGCTCAAGATATTGTATACTTTGCTAGAGGGCTGCCCTTGGTTCTTGTGAATGTAGGGTCTGTATTATTTGGTAAGGAAAAAGCTGAATGGGAAGCTATGTTGAGGAAGCTACAAGGAATAGGGGAAAAAGAAGTGAAAGAAGATATCCTGGACGAGTTGAAAATAAGTTTTGAAGCATTAACGTATGAGCAACAACAGATATTCCTCGACATCGCGTGTTTATTTGCTGGACATGACAAAACATATCCTTGTTACATGTGGGATGATTGCGAATATTATTCAAGAAACAGTGTGAATGCTCTTGTTCTAAGGTCTCTAGTAAAAGTTAGAGATGATAATACCTTTGAAATGCATGACCAGCTCCGAGACCTTGGTAGGGATATCAGCTGTGAAGGGAAATTGCATGACTGGGGGCGGTGGAGTAGGTTGTGGAATAAGGATCAAGCTTTGCATGTATTTATGCGGGATCTGGGAACAGACCGCGTTCAAGCCCTCCGCATTAGATTTAGAGGCTCTATACATCGTTCGGATTGGGAATGTGGTTATCCACGCATTGTAGGAGAAAAGTTTCTTAATCTTCCAAATCTAAGGTACCTTAATATAAATGGCGCAGACCTTGATGGGAATTTTGAGCATTGCCTTCCACATTTAAGGTGGCTTCAGTGGAGAAAATGTTTGATGAAATTTATGCCTACCAATTTTCACTTGAGGAATCTTGTTGTTCTCGATCTATCATATAGTGATATCACGGACGACTGGGTCCTTTGGAGTCAAATTAAGATGTCAAAAAAGTTGAAAGTTCTAAATCTCCATCAGTGCCGTTTCTTAAGGACAGTTCCTTCCTTGTCCGCATTTTCGAATTTAGAGAGGTTGGTGGTAAGCTGTTGTGACGAACTTTGTAGTCTTGATGGTATCGAAGAACTGGAATCCTTAAGATACTTAGATGTATCAGGCTATAATTCCCTGGAAACACTGCCGAATCTGTCCAGGTTAAGCAACTTTGAGGAATTGAAAGTCTCAGAATGTGAGATAATTGATATTCCAGGGCTAGACAAATTGGAGTCCTTAGAACGTCTGTACATGTGGCATTGCAGATCCTTAGAAAGATTACCGGATTTGTCAAACTTAAAAAGGTTGAAGAAATTCGATGCCCCATTGTGCCTTAAGCTAATCGAGCTTCAAGGCCTGGGCAAATTGGATTCCTTAGAAGATTTGGACATATGTTGTTGCGAATCCTTAGAAAGATTACCAGATCTGTCAAACTTGAAAAAGCTGAAGACATTAGACGTCTCAAGTTGCCAAAAGCTAACTGAGATTCAAGGCCTGGACAGATTGGGTTCCTTGGAACTTTTGAATATAAGCATTTGCAGATCCTTAGACAGATTACCAGATCTCTCAAACTTAAAAAGGTTAAAAGAATTAGATGCTCGCCACGTGAAGCTAACTGAGATTCGAGGCCTTGGTGGACTGGAATCTTTAGAGGTTTTGGATATCAGTGATTGCAGAGGCATAGAAAGAGTATTTGATATGTCGCACTTAAAAAGGTTGAGAGAATTGAAGACTCAGTCATGTCACAAACTAATCGAGATTCAGGGTCTAGAGGGTTTGGAATCCTTGAAGCATTTGGTTATGGGTGATTGCAAATCCATTACAAAATTATCAGATCTATCAAACTTAAAAAGTTTAAAAACAATAGATGTCTCAGCCTGTAGCGCACTCATTGAGATTCAAGGTCTACACAGATTAGAATCCTTGGAGCATTTGAACATGAGTAAATGCACATCCATAGAAAGATTACCCGACCTACCGAACCGTGGAATGCTAAAGGAAATAGATCTGTCTAGTTGCAGCAAGTTACATGAGGTCGAGGGACTTCGAGTTGTGGAATCCCTGGAGAACTTGAATATGTCGGGTTGCGAAGCACTGGGAGAAATAATAGATCTGCGAAGCTTAAGAAATTTAAAGAAGCTAGACATTAATTGTCTCCTAATGCTAAATGAGATCCGGGGACTTGAAGAACTTGAATCTTTAGAATTGTTGTACATATGTGGGTGCGAGTCGATTAAAGTGTTACCTGATATATCAAATCTTGTGAAATTAAGAGTAATAAAAGCTGCTGACTGTGAGAACCTAATTGAGATCCAGGGGCTTGAAGAACTGAAATCCTTAGAATATTTGGACATTGGATTTTGCAAGTCGATTGAAAACTTCCCTGATATTTCAAATCTTGTGAAATTAAGAGTAATAAAAGCTGCTGATTGTGAGAAGCTAACTGAGATCCTGGGGCTTGACAAACTGACATCCTTAGAATATTTGGACATTGGCTGCTGCAAGTGGATTGAAAGCTTACCTGATTTTTCAAATCTTAAGAAATTAGAAGTAATAAATGCTACTGATTGTGAGAACCTAACTGAGATCCGGGGACTTGAGAAATTGGAATCCTTAAGGGTCTTGTACATTCGTGGATGTGAATCACTAAAAATCCCGTATTTAAAAAATACAAGGATACATGAGGATTATGACAACGATGGTATATCTCAACTCTACATTTCATTTACTGTTTTCTTTATTCTAGAGGTATCTTCCATGATTTATTTCTTATTATCTTCCCTTTTTCTGATTTGCTCTAGAACTAGGGAATTATCTCGGGACTGA

Network for GWHGAAZE024484

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.23	NB-ARC	22	113	3.80E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.252
	SRR3591706	second leaf	2.040
	SRR3591707	mature leaf	1.941
	SRR3591708	Shoot apex	2.579
	SRR3591709	Stem	4.268
	SRR3591710	White floral bud	2.511
	SRR3591711	White flower	3.673
	SRR3591712	Green floral bud	2.636
	SRR3591713	Yellow flower	2.402
SRP173429	SRR8316895	Juvenile bud stage	0.908
	SRR8316896	Juvenile bud stage	0.909
	SRR8316897	Juvenile bud stage	0.064
	SRR8316894	Third green stage	0.449
	SRR8316900	Third green stage	0.985
	SRR8316901	Third green stage	0.739
	SRR8316898	Complete white stage	0.168
	SRR8316899	Complete white stage	1.538
	SRR8316903	Complete white stage	0.796
	SRR8316902	Silver flowering stage	0.375
	SRR8316904	Silver flowering stage	0.364
	SRR8316905	Silver flowering stage	0.100
	SRR8316906	Gold flowering stage	0.673
	SRR8316907	Gold flowering stage	0.697
	SRR8316908	Gold flowering stage	0.438
SRP132670	SRR6706286	Control	0.471
	SRR6706287	Light intensity 50%	0.349
	SRR6706288	Light intensity 20%	0.539
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.524
	CNS0095593	Slightly white alabastrum(diploid) 2	0.775
	CNS0095594	Slightly white alabastrum(diploid) 3	0.943
	CNS0095595	Whole white alabastrum(diploid) 2	0.500
	CNS0095596	Whole white alabastrum(diploid) 3	0.133
	CNS0095597	Whole white alabastrum(diploid) 4	0.263
	CNS0095598	Silvery flower (diploied) 1	1.778
	CNS0095599	Silvery flower (diploied) 2	1.940
	CNS0095600	Silvery flower (diploied) 3	0.749
	CNS0095601	Golden flower (diploid) 1	1.572
	CNS0095602	Golden flower (diploid) 2	2.179
	CNS0095603	Golden flower (diploid) 3	1.774
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.171
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.178
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.048
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.468
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.069
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.661
	CNS0095610	Silvery flower (diploied) 1	0.651
	CNS0095611	Silvery flower (diploied) 2	1.061
	CNS0095612	Silvery flower (diploied) 3	0.690
	CNS0095613	Golden flower (tetraploid) 1	0.375
	CNS0095614	Golden flower (tetraploid) 2	0.663
	CNS0095615	Golden flower (tetraploid) 3	0.405
CRA001975	CRR073297	Stem 1	0.381
	CRR073298	Stem 2	0.618
	CRR073299	Stem 3	0.025
	CRR073300	Leaf 1	0.483
	CRR073301	Leaf 2	0.587
	CRR073302	Leaf 3	0.125
	CRR073303	Juvenile bud 1	0.200
	CRR073304	Juvenile bud 2	0.151
	CRR073305	Juvenile bud 3	0.235
	CRR073306	Third green 1	0.042
	CRR073307	Third green 2	0.027
	CRR073308	Third green 3	0.023
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.094
	CRR073311	Second white 3	0.091
	CRR073312	Silver flowering 1	0.182
	CRR073313	Silver flowering 2	0.144
	CRR073314	Silver flowering 3	0.033
	CRR073315	Gold flowering 1	0.027
	CRR073316	Gold flowering 2	1.014
	CRR073317	Gold flowering 3	0.083
	CRR073318	Tawny withering 1	0.792
	CRR073319	Tawny withering 2	0.985
	CRR073320	Tawny withering 3	0.700