Gene detail

Detail information of GWHGAAZE024521

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006482555.1	7.0452E-178	PREDICTED: aldose 1-epimerase-like [Citrus sinensis]
COG	YP_008148073.1	8E-95	aldose 1-epimerase
trEMBL	tr\|F6H5Q1\|F6H5Q1_VITVI	5E-177	Aldose 1-epimerase {ECO:0000256\|PIRNR:PIRNR005096}
TAIR10	AT5G15140.1	1E-118	Galactose mutarotase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	44201601	44206444	+
GWHAAZE00000007	mRNA	44201601	44206444	+
GWHAAZE00000007	exon	44201601	44201781	+
GWHAAZE00000007	exon	44201908	44201957	+
GWHAAZE00000007	exon	44204028	44204151	+
GWHAAZE00000007	exon	44204312	44204419	+
GWHAAZE00000007	exon	44205813	44206444	+
GWHAAZE00000007	CDS	44201601	44201781	+
GWHAAZE00000007	CDS	44201908	44201957	+
GWHAAZE00000007	CDS	44204028	44204151	+
GWHAAZE00000007	CDS	44204312	44204419	+
GWHAAZE00000007	CDS	44205813	44206444	+

Transcript Sequence
>GWHTAAZE024555 ATGTCCAATGTAAATGCATTAGTCTGTTTAATAATTGTTGTTTTTGGGGTCATTGTTGTTAATGGATCATCATTAAATAATGAAGAGGTTGGGATTTATGAGCTCAATAAAGGAGATTTCTCTGTTAAATTCACCAATTGGGGTGCTACAATTATCTCTGTTTTTCTTCCTGACAAAGATGGAAAGTTGGCTGATGTTGTTCTTGGGTATGACTCTGTTGAGGACTACAAGGATGACAAGCCCTACTTGGGTGCTCTTGTCGGACGGGTGGCTAACCGGATCGGAGGAGCCAAATTTACCTTAAACGGGACCGTTTATAATCTAGTCGCAAACGAGAAGCACAACATGCTTCATGGTGGGAAGAAAGGATTCAGTGATGTTGTTTGGAAGGTAGAGAAGCATGAGAAGGATGGTGAATCTCCAAGTATCACCTTCACTTATGACAGTGCTGATGGGGAAGAAGGATTTCCTGGGGAACTTCGTGTATCCGTGACCTATGCTCTCACCGGATCATACAAACTAAGTGTAAAAATGAAAGCCAAAGCTATAAACAAAGCCACACCAGTGAACCTAGCTCAACACAGCTACTGGAACCTCGGTGGCCACAACAGTGGCAATATCCTCTCCGATGAGGTCCAGATATTCGGGTCCCACATTACTCCCACAGACAAAAACCTCATCCCAACAGGCGAAATCCGGCCCATTAAAGGAACACCGTATGATTTCTTCGAACCACAAGTCCTTTCAAGCAAGATCAATGGCCTTCCTGACCTTTATGATATCAACTATGTTCTTGATGGTGATAATGGCAACAAGAAGATGAAGCCAGTAGCTAAGGTGCACAACAAGAAGAGTGGAAGAGTGATGGAGCTGTCGAGTGATGCACCCGGGGTGCAGTTTTATACGGGTAATTATCTGAAGGACTTGAAGGGCAAAGGTGGGTTTGTTTATCAAGCTCATGCTGGGCTTTGTTTGGAGACTCAAGGGTTCCCGGACTCGGTGAATCACCCGAATTTTCCTTCGCAGATTATTAATAAAGGGGAGACTTATAAGCATAAGATGTTGTATAAGTTTTCGATTAATAAGGATATGTAG

Network for GWHGAAZE024521

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01263.21	Aldose_epim	33	357	2.70E-93

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01785	galM, GALM	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Galactose metabolism	map00052

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0019318	biological_process	hexose metabolic process
GO:0016853	molecular_function	isomerase activity
GO:0003824	molecular_function	catalytic activity
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.288
	SRR3591706	second leaf	0.090
	SRR3591707	mature leaf	0.188
	SRR3591708	Shoot apex	0.283
	SRR3591709	Stem	0.573
	SRR3591710	White floral bud	9.192
	SRR3591711	White flower	0.982
	SRR3591712	Green floral bud	26.064
	SRR3591713	Yellow flower	3.310
SRP173429	SRR8316895	Juvenile bud stage	7.871
	SRR8316896	Juvenile bud stage	17.620
	SRR8316897	Juvenile bud stage	0.692
	SRR8316894	Third green stage	12.513
	SRR8316900	Third green stage	103.430
	SRR8316901	Third green stage	88.900
	SRR8316898	Complete white stage	6.728
	SRR8316899	Complete white stage	7.227
	SRR8316903	Complete white stage	12.016
	SRR8316902	Silver flowering stage	7.830
	SRR8316904	Silver flowering stage	12.033
	SRR8316905	Silver flowering stage	5.497
	SRR8316906	Gold flowering stage	11.365
	SRR8316907	Gold flowering stage	12.729
	SRR8316908	Gold flowering stage	5.672
SRP132670	SRR6706286	Control	72.492
	SRR6706287	Light intensity 50%	72.138
	SRR6706288	Light intensity 20%	64.888
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	49.682
	CNS0095593	Slightly white alabastrum(diploid) 2	45.454
	CNS0095594	Slightly white alabastrum(diploid) 3	50.532
	CNS0095595	Whole white alabastrum(diploid) 2	150.745
	CNS0095596	Whole white alabastrum(diploid) 3	164.086
	CNS0095597	Whole white alabastrum(diploid) 4	204.762
	CNS0095598	Silvery flower (diploied) 1	19.583
	CNS0095599	Silvery flower (diploied) 2	30.999
	CNS0095600	Silvery flower (diploied) 3	20.327
	CNS0095601	Golden flower (diploid) 1	22.491
	CNS0095602	Golden flower (diploid) 2	25.730
	CNS0095603	Golden flower (diploid) 3	26.732
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.232
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.355
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.958
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.750
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.759
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.557
	CNS0095610	Silvery flower (diploied) 1	1.224
	CNS0095611	Silvery flower (diploied) 2	3.591
	CNS0095612	Silvery flower (diploied) 3	1.083
	CNS0095613	Golden flower (tetraploid) 1	0.929
	CNS0095614	Golden flower (tetraploid) 2	0.917
	CNS0095615	Golden flower (tetraploid) 3	1.403
CRA001975	CRR073297	Stem 1	22.207
	CRR073298	Stem 2	21.171
	CRR073299	Stem 3	11.752
	CRR073300	Leaf 1	105.185
	CRR073301	Leaf 2	67.081
	CRR073302	Leaf 3	33.557
	CRR073303	Juvenile bud 1	75.106
	CRR073304	Juvenile bud 2	85.787
	CRR073305	Juvenile bud 3	10.936
	CRR073306	Third green 1	53.776
	CRR073307	Third green 2	87.274
	CRR073308	Third green 3	64.455
	CRR073309	Second white 1	9.247
	CRR073310	Second white 2	16.526
	CRR073311	Second white 3	16.616
	CRR073312	Silver flowering 1	56.561
	CRR073313	Silver flowering 2	56.162
	CRR073314	Silver flowering 3	31.377
	CRR073315	Gold flowering 1	61.833
	CRR073316	Gold flowering 2	15.686
	CRR073317	Gold flowering 3	39.451
	CRR073318	Tawny withering 1	80.985
	CRR073319	Tawny withering 2	68.643
	CRR073320	Tawny withering 3	48.552