Gene detail

Detail information of GWHGAAZE024615

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274695.1	3.47982E-89	PREDICTED: spermidine hydroxycinnamoyl transferase-like [Vitis vinifera]
Swissprot	tr\|O64470\|SHT_ARATH	3E-71	Spermidine hydroxycinnamoyl transferase
trEMBL	tr\|F6HYK9\|F6HYK9_VITVI	2E-88	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59773.1}
TAIR10	AT2G19070.1	1E-56	spermidine hydroxycinnamoyl transferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	46244531	46245909	+
GWHAAZE00000007	mRNA	46244531	46245909	+
GWHAAZE00000007	exon	46244531	46245207	+
GWHAAZE00000007	exon	46245834	46245909	+
GWHAAZE00000007	CDS	46244531	46245207	+
GWHAAZE00000007	CDS	46245834	46245909	+

Transcript Sequence
>GWHTAAZE024649 ACCCATGCACCCACACTCTACTTCTATGAAAACCCCGGCGAATTTTCTTCCGCAGTAAGTACCCTCAAAGATTCGCTAAGCAAGATATTAGTCCCGTTCTACCCACTGGCAGGACGCTTACGGTGCATTGGCAGCGAGGGCCGCCTCGAGCTCGACTGCAACTCCTTAGGGGCTCAACACCTCGTAGCCGAGTCTGAAGCCAAAATTGAGGACTTCGGGGACTTCACTCCCACACCACAAATCCGATCCCTCATCCCGACAACAGACTACAACGAACCAATTGAACAACTTCCATTGCTTTTGGTACAAGTCACAAAGCTCGGATGCGGTGGCGCTAGCCTCGGCTTAGGGATCTCGCACATAATGGTGGATGGAGCAAGTGCACTACACTTTGTCACTGAGTGGGCCAAAATTGCACGCGGTGAACAGTCAAATAACCCTTCGTTTCTTGATCAAACTGTATTAAAACACAAGGAGCCTTTACCTTCATCGCCGAGGTTTGATCACACAGAGTTTAGTCCACGTCCGCTTTTGGTAGGCTCATTAAATAACTTGGAGGAACGGAAGAAGGAAACTACCGTCACGATGCTAAAGCTAGAGAGAGAAGAAATTGAGAAACTTAAGAGGAGGGCTAACGAGGTTCAAACTGGCAACAATTTTGGTCGGCCCTATAGTAGGTCATATGTGGAGGTGCGTGAGCAAGGCACGCAACCACATGATCCAACAAATAACGAGTTTAGTTATACCCGTTGA

Network for GWHGAAZE024615

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02458.16	Transferase	2	219	9.20E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13065	E2.3.1.133, HCT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940
		Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
		Flavonoid biosynthesis	map00941

Gene Ontology

GO term	Ontology	Name
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.182
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.098
	SRR3591712	Green floral bud	0.372
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.024
	SRR8316901	Third green stage	0.022
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.069
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.043
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.006
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.029
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.013
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.131
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.749
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.777
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.444
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.059
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.323
	CNS0095610	Silvery flower (diploied) 1	0.337
	CNS0095611	Silvery flower (diploied) 2	0.805
	CNS0095612	Silvery flower (diploied) 3	0.793
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.046
CRA001975	CRR073297	Stem 1	0.129
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.123
	CRR073300	Leaf 1	0.009
	CRR073301	Leaf 2	0.174
	CRR073302	Leaf 3	0.149
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.082
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.012
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.068
	CRR073309	Second white 1	0.037
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.017
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000