Gene detail

Detail information of GWHGAAZE024650

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656817.1	0	PREDICTED: uncharacterized protein LOC100266729 isoform X1 [Vitis vinifera]
COG	YP_001958461.1	2E-28	hypothetical protein Aasi_1443
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	3E-49	Serine/threonine-protein kinase EDR1
trEMBL	tr\|F6GXC3\|F6GXC3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44609.1}
TAIR10	AT5G57610.1	0	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	47067105	47078523	-
GWHAAZE00000007	mRNA	47067105	47078523	-
GWHAAZE00000007	exon	47076040	47078523	-
GWHAAZE00000007	exon	47075630	47075734	-
GWHAAZE00000007	exon	47074697	47074849	-
GWHAAZE00000007	exon	47070545	47070708	-
GWHAAZE00000007	exon	47069800	47069947	-
GWHAAZE00000007	exon	47069195	47069317	-
GWHAAZE00000007	exon	47068985	47069072	-
GWHAAZE00000007	exon	47067105	47067271	-
GWHAAZE00000007	CDS	47076040	47078523	-
GWHAAZE00000007	CDS	47075630	47075734	-
GWHAAZE00000007	CDS	47074697	47074849	-
GWHAAZE00000007	CDS	47070545	47070708	-
GWHAAZE00000007	CDS	47069800	47069947	-
GWHAAZE00000007	CDS	47069195	47069317	-
GWHAAZE00000007	CDS	47068985	47069072	-
GWHAAZE00000007	CDS	47067105	47067271	-

Transcript Sequence
>GWHTAAZE024684 ATGTGTAATAAGAGAATTGAATGCTTAAGGCAATCGTTAAAATCCGAGGCCGAAATTGAACAGCAGCAGTATCATCAGGCACAGTTAGTGTACTTAATGGAGAGCCCTACTGTGACCACGGGTTCGATTTGGAGCCCTAATGATGAAAATCCACGTGTGAAGTTCTTGTGTAGTTTCAATGGTAGTATATTGCCTAGGCCCCAAGATGGGAAGCTTAGGTATGTGGGTGGTGAGACAAGGATTGTGAGTGTTCCTCGAGAAATCGGTTTCGAGGAGCTGATGACGAAGATGAGGGAACTCTTTGATGGGGCCGCGGTGTTGAAATATCAACAGCCCGATGAGGACCTTGATGCTCTGGTTTCTGTTGTGAATGATGACGATGTAACGAATATGATGGAGGAGTATGATAAGTTGGGATCGGGTGATGGGTTCACTAGACTGAGGATTTTCCTTTTCTCGGGTCCTGATCATGATGGTTCGGTTCATTTTGTTGACGGTGATGAAAGGGACAATGAGAGGAGGTATGTTGATGCTTTGAATAGCCTTAATGATTCCCCTAGTTTTATCAAGGGACAGGCTAATGAGTCTTTACTGAACTCTCCAGTAGATGATATACATGCTGCAGAACAATACTTTAGTCAGATGAATATTGATGGTGGGGTCCACGGGCAGAGGAATTTCGAGATGCCAATGCCACAGATTAATTTGCGTCACCTCAATATTCCTCATGTGCGTTCGAGTTTGCACCAACAATCTACAACCCAGAGGTATAATGAGATGGAAGCTCCATGGAGTCCAGCATATTACTCCCCTAGGCATGTTGGACACCACGATCCAAGGCTGGTGAATGAATTTCCAACTTCGCCAACCTCAGCACGTTATGGTATTCCCTATGGGGAGTTTTCAGAGCGAAATTTGGATAGAATTAATGAGGAGTATAGTTGGCAGCAAGTGAATCATCAATCCCCGTATGATCACCAACCCCATACCCAGTTACCAGATAATTTTGTATGGGTTCCAACTGGACCATTACCAGGTGACAAAGCCGGTTTCCCCGGTAATATACTTCACGGGTCTGGTTTTTATGAAGGAAACAGTATCTGTGAGCACTGTAGAACGGCTTTTCATAGAAATCATGGGTATACTGATTCTCCTTGGTCACATGAAGAACTGCCACATTTGGAGCTACCCAATGTGGGGAATGGGTTTCATCAAGTTGCTTGTCGATGTGCCGAGTGTCCCCCCAATAGGGAAGCCATCTTGCTGAATACAGAATCGAAATTGCACCATCCATTCTACCCGAGAGAGCAGAGTGATCCTCGGTCCCTCTGTAATGAAACTCAGAATTATGATAGGGGATGGGTTTTGCCGCATCAATCTACTCCTCGGGTCGAGGAACCAAGACCACCACCACATATTTCTGGCGCTGGAAGGTTGAATGATCCCTACACTATAGATGCTAGTTTGCCAGATGGTCAGCACGTGCCCTCGCATTATGTCCATCATGAGGACCAGCCACGGTACATCCGACCTGTAACTGAACTGGGGAATGAAGCGTTTCTTGATCAAGCTGTGCCTGTTGGATCTCCTCACACCCATGTTCCTCTTGAAGAGCGTGGAGTTCGATATGGGAATTTGCCTTATGCTTATGGACCGGATAATAATCTTTACCAAATGCCACATGGACCCGTCGTACCTGGACATGCTCTATTGCGAAATGTTCATAACCCAATTCATGGGGTTCCCTCTTATGATGGCTGTAGTTCACATCAGCAAGCAAATGTTCCTTCTGCTCCAGGATTCGTTCGGGGTACCCTTGAGGGTAGTCCTAGGTTTCAAGTTGGAGTTGAGAATCAGAATCCTTGGGTTGAGTCCCCTCCAAACATGGTGGGACTAAATCCCTTAAAAATGATGCCAAACACTAATAAGCTGGAGAATCAGCACTTGATTACTCCGGATCCCACTCGATCCCCTCGCGAGATGCTAAACATAAAGATTGCTGCTAGTCCTAGTGATCCTCTGGCACTGCCTGATTCTGTATCAACATTTGTTGATGATAAATCAGTTCTTTTGACCACTCCTTTTTCACAATTAAGAAATGATGCCAATGTAACTGATTTGATCATGATGGAGAAGAAAAGTAGTCATGGAGGAGCAAAAGAAACAAAGTATGATAGTAAGGTTCACTCGGACATGCAACATTTTTCGGGTTTGGACCAAAACAAGAATCTTGATGACGTGGCATACCCAAAGGATTTGAGTACTAATCAAGTTGAAAAGCAGGATGGAGTTAATGCCCTTGAAAATGTGGACCTTCAAGTAGAACGTATGAGTTTCTTACCCGAGTTGATTGCATCTGTAAAGAAGGCAGCACTAATGAATGCTGACGATGTTAAAACTCAAGTTCAAGAAAATGATGATTCTGAAATCGGCGTGCATGATGAGACCACAAAAGAAGTAGCTCAGAATGAATCAGAAGCACTGGATGGGCATGGGGATTTGGAGGTGGATTCTGATGGTGACAGTGCAACCGCTTCTAAGATTGAGCCTACAAAAGCTGAGGAGGAAGCTATTTCAAGGGGATTGCAGACCATAAGAAACGATGATTTGGAGGAGATTCGAGAATTAGGCTCTGGTACGTATGGATCTGTTTATCATGGAAAATGGAAGGGCTCTGATGTGGCAATAAAGAGAATTAAAGCTAGTTGCTTTGCTGGAAGACCGTCCGAAAGAGAACGTCTGATTGCTGATTTTTGGAAGGAGGCTCTCATATTAAGCTCATTGCATCATCCAAATGTTGTTTCTTTCTACGGCATAGTTCGTGATGGGCCTGATGGATCTTTAGCAACCGTCACGGAGTTCATGGTTAATGGATCTTTGAAACAATTTTTACAGAAAAAAGACAGAACAATAGATCGTCGTAAGAGACTCATCATAGCTATGGATGCTGCATTTGGCATGGAATATTTGCATGGAAAGAATATTGTTCATTTTGATCTAAAATGTGAGAATCTGTTAGTAAATATGAGAGATCCACATCGACCTGTGTGCAAGATTGGGGATCTGGGATTATCAAAGGTAAAGCAGCACACTTTAGTGTCTGGAGGCGTTCGTGGAACTTTACCTTGGATGGCACCTGAGCTTCTTAGTGGCAAAAGCAACATGGTTTCAGAAAAGATTGATGTTTACTCATTCGGAATTGTCATGTGGGAATTGCTCACCGGAGATGAACCTTATGCGGATATGCATTGCGCTTCCATAATCGGAGGAATTGTGAACAATTCATTACGTCCAACAATTCCAACGTGGTGCGACCCTGAGTGGAAATCCCTAATGGGAAGTTGTTGGGCATCCGATCCAGCTCAAAGGCCTTCTTTCTCCGAAATCTCTCAGAAATTGAGAACTATGGCCGCGGCTATCAACTTGAAGTGA

Network for GWHGAAZE024650

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00564.25	PB1	68	152	3.90E-19
PF07714.18	PK_Tyr_Ser-Thr	871	1133	7.30E-62

Protein Sequence

>GWHPAAZE024668
MCNKRIECLRQSLKSEAEIEQQQYHQAQLVYLMESPTVTTGSIWSPNDENPRVKFLCSFNGSILPRPQDGKLRYVGGETRIVSVPREIGFEELMTKMRELFDGAAVLKYQQPDEDLDALVSVVNDDDVTNMMEEYDKLGSGDGFTRLRIFLFSGPDHDGSVHFVDGDERDNERRYVDALNSLNDSPSFIKGQANESLLNSPVDDIHAAEQYFSQMNIDGGVHGQRNFEMPMPQINLRHLNIPHVRSSLHQQSTTQRYNEMEAPWSPAYYSPRHVGHHDPRLVNEFPTSPTSARYGIPYGEFSERNLDRINEEYSWQQVNHQSPYDHQPHTQLPDNFVWVPTGPLPGDKAGFPGNILHGSGFYEGNSICEHCRTAFHRNHGYTDSPWSHEELPHLELPNVGNGFHQVACRCAECPPNREAILLNTESKLHHPFYPREQSDPRSLCNETQNYDRGWVLPHQSTPRVEEPRPPPHISGAGRLNDPYTIDASLPDGQHVPSHYVHHEDQPRYIRPVTELGNEAFLDQAVPVGSPHTHVPLEERGVRYGNLPYAYGPDNNLYQMPHGPVVPGHALLRNVHNPIHGVPSYDGCSSHQQANVPSAPGFVRGTLEGSPRFQVGVENQNPWVESPPNMVGLNPLKMMPNTNKLENQHLITPDPTRSPREMLNIKIAASPSDPLALPDSVSTFVDDKSVLLTTPFSQLRNDANVTDLIMMEKKSSHGGAKETKYDSKVHSDMQHFSGLDQNKNLDDVAYPKDLSTNQVEKQDGVNALENVDLQVERMSFLPELIASVKKAALMNADDVKTQVQENDDSEIGVHDETTKEVAQNESEALDGHGDLEVDSDGDSATASKIEPTKAEEEAISRGLQTIRNDDLEEIRELGSGTYGSVYHGKWKGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLQKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPHRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGDEPYADMHCASIIGGIVNNSLRPTIPTWCDPEWKSLMGSCWASDPAQRPSFSEISQKLRTMAAAINLK

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-6

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.790
	SRR3591706	second leaf	28.345
	SRR3591707	mature leaf	80.409
	SRR3591708	Shoot apex	22.760
	SRR3591709	Stem	40.827
	SRR3591710	White floral bud	39.820
	SRR3591711	White flower	56.566
	SRR3591712	Green floral bud	32.565
	SRR3591713	Yellow flower	52.518
SRP173429	SRR8316895	Juvenile bud stage	23.793
	SRR8316896	Juvenile bud stage	30.817
	SRR8316897	Juvenile bud stage	15.222
	SRR8316894	Third green stage	14.115
	SRR8316900	Third green stage	30.561
	SRR8316901	Third green stage	29.572
	SRR8316898	Complete white stage	14.821
	SRR8316899	Complete white stage	37.476
	SRR8316903	Complete white stage	32.487
	SRR8316902	Silver flowering stage	32.264
	SRR8316904	Silver flowering stage	51.744
	SRR8316905	Silver flowering stage	23.223
	SRR8316906	Gold flowering stage	64.358
	SRR8316907	Gold flowering stage	66.769
	SRR8316908	Gold flowering stage	71.878
SRP132670	SRR6706286	Control	32.363
	SRR6706287	Light intensity 50%	33.805
	SRR6706288	Light intensity 20%	34.510
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.831
	CNS0095593	Slightly white alabastrum(diploid) 2	16.409
	CNS0095594	Slightly white alabastrum(diploid) 3	19.059
	CNS0095595	Whole white alabastrum(diploid) 2	18.624
	CNS0095596	Whole white alabastrum(diploid) 3	19.323
	CNS0095597	Whole white alabastrum(diploid) 4	19.040
	CNS0095598	Silvery flower (diploied) 1	29.972
	CNS0095599	Silvery flower (diploied) 2	28.632
	CNS0095600	Silvery flower (diploied) 3	79.138
	CNS0095601	Golden flower (diploid) 1	31.755
	CNS0095602	Golden flower (diploid) 2	66.415
	CNS0095603	Golden flower (diploid) 3	66.480
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.578
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.156
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.413
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.432
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.142
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.105
	CNS0095610	Silvery flower (diploied) 1	75.157
	CNS0095611	Silvery flower (diploied) 2	77.450
	CNS0095612	Silvery flower (diploied) 3	62.506
	CNS0095613	Golden flower (tetraploid) 1	37.014
	CNS0095614	Golden flower (tetraploid) 2	60.781
	CNS0095615	Golden flower (tetraploid) 3	86.526
CRA001975	CRR073297	Stem 1	34.013
	CRR073298	Stem 2	29.533
	CRR073299	Stem 3	26.600
	CRR073300	Leaf 1	29.383
	CRR073301	Leaf 2	29.951
	CRR073302	Leaf 3	27.098
	CRR073303	Juvenile bud 1	28.870
	CRR073304	Juvenile bud 2	20.908
	CRR073305	Juvenile bud 3	35.859
	CRR073306	Third green 1	44.207
	CRR073307	Third green 2	30.925
	CRR073308	Third green 3	40.904
	CRR073309	Second white 1	38.530
	CRR073310	Second white 2	57.423
	CRR073311	Second white 3	57.586
	CRR073312	Silver flowering 1	40.774
	CRR073313	Silver flowering 2	27.027
	CRR073314	Silver flowering 3	29.115
	CRR073315	Gold flowering 1	21.993
	CRR073316	Gold flowering 2	35.636
	CRR073317	Gold flowering 3	18.946
	CRR073318	Tawny withering 1	20.910
	CRR073319	Tawny withering 2	17.305
	CRR073320	Tawny withering 3	21.782