Detail information of GWHGAAZE024654


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273742.21.338E-168PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Vitis vinifera]
COGYP_005432194.12E-14putative beta-glucanase
Swissprottr|Q38910|XTH23_ARATH2E-151Probable xyloglucan endotransglucosylase/hydrolase protein 23 (Precursor)
trEMBLtr|F6GXE7|F6GXE7_VITVI5E-169Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}
TAIR10AT4G25810.12E-120xyloglucan endotransglycosylase 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4714012947141150-
GWHAAZE00000007mRNA4714012947141150-
GWHAAZE00000007exon4714012947140477-
GWHAAZE00000007exon4714060147140794-
GWHAAZE00000007exon4714088747141150-
GWHAAZE00000007CDS4714088747141150-
GWHAAZE00000007CDS4714060147140794-
GWHAAZE00000007CDS4714012947140477-
Transcript Sequence

Network for GWHGAAZE024654

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0283GO:0042546 cell wall biogenesis GOslim:biological_process
GO:0006073 cellular glucan metabolic process GOslim:biological_process
GO:0010411 xyloglucan metabolic process GOslim:biological_process
GO:0005618 cell wall GOslim:cellular_component
GO:0016762 xyloglucan:xyloglucosyl transferase activity GOslim:molecular_function
GO:0048046 apoplast GOslim:cellular_component
map04075 Plant hormone signal transduction
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GOslim:molecular_function
GO:0005975 carbohydrate metabolic process GOslim:biological_process


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00722.22Glyco_hydro_16252044.60E-62
PF06955.13XET_C2212651.70E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14504TCH4 Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0010411biological_processxyloglucan metabolic process
GO:0042546biological_processcell wall biogenesis
GO:0006073biological_processcellular glucan metabolic process
GO:0005618cellular_componentcell wall
GO:0048046cellular_componentapoplast
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf194.204
SRR3591706second leaf3.647
SRR3591707mature leaf0.825
SRR3591708Shoot apex14.993
SRR3591709Stem120.445
SRR3591710White floral bud6.284
SRR3591711White flower11.376
SRR3591712Green floral bud6.063
SRR3591713Yellow flower2.757
SRP173429 SRR8316895Juvenile bud stage 81.834
SRR8316896Juvenile bud stage 54.198
SRR8316897Juvenile bud stage 109.803
SRR8316894Third green stage 5.087
SRR8316900Third green stage 5.669
SRR8316901Third green stage 16.808
SRR8316898Complete white stage 3.162
SRR8316899Complete white stage 31.730
SRR8316903Complete white stage 3.594
SRR8316902Silver flowering stage24.066
SRR8316904Silver flowering stage7.931
SRR8316905Silver flowering stage5.794
SRR8316906Gold flowering stage 5.316
SRR8316907Gold flowering stage 8.354
SRR8316908Gold flowering stage 11.499
SRP132670SRR6706286Control6.280
SRR6706287Light intensity 50%12.576
SRR6706288Light intensity 20%13.682
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.373
CNS0095593Slightly white alabastrum(diploid) 245.236
CNS0095594Slightly white alabastrum(diploid) 330.872
CNS0095595Whole white alabastrum(diploid) 220.173
CNS0095596Whole white alabastrum(diploid) 33.226
CNS0095597Whole white alabastrum(diploid) 415.036
CNS0095598Silvery flower (diploied) 132.711
CNS0095599Silvery flower (diploied) 235.375
CNS0095600Silvery flower (diploied) 324.671
CNS0095601Golden flower (diploid) 124.824
CNS0095602Golden flower (diploid) 221.774
CNS0095603Golden flower (diploid) 318.644
CNS0095604Slightly white alabastrum(tetraploid) 13.564
CNS0095605Slightly white alabastrum(tetraploid) 22.668
CNS0095606Slightly white alabastrum(tetraploid) 34.664
CNS0095607Whole white alabastrum(tetraploid) 11.633
CNS0095608Whole white alabastrum(tetraploid) 21.431
CNS0095609Whole white alabastrum(tetraploid) 30.916
CNS0095610Silvery flower (diploied) 12.703
CNS0095611Silvery flower (diploied) 20.450
CNS0095612Silvery flower (diploied) 35.264
CNS0095613Golden flower (tetraploid) 13.184
CNS0095614Golden flower (tetraploid) 20.450
CNS0095615Golden flower (tetraploid) 30.177
CRA001975CRR073297Stem 112.916
CRR073298Stem 25.535
CRR073299Stem 37.821
CRR073300Leaf 16.392
CRR073301Leaf 217.859
CRR073302Leaf 37.359
CRR073303Juvenile bud 13.729
CRR073304Juvenile bud 22.304
CRR073305Juvenile bud 320.352
CRR073306Third green 126.484
CRR073307Third green 262.914
CRR073308Third green 332.410
CRR073309Second white 10.821
CRR073310Second white 20.346
CRR073311Second white 30.612
CRR073312Silver flowering 11.117
CRR073313Silver flowering 20.225
CRR073314Silver flowering 30.305
CRR073315Gold flowering 1128.562
CRR073316Gold flowering 2242.584
CRR073317Gold flowering 378.561
CRR073318Tawny withering 1182.570
CRR073319Tawny withering 2210.965
CRR073320Tawny withering 3362.454