Gene detail

Detail information of GWHGAAZE024701

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010659952.1	0	PREDICTED: serine/threonine-protein kinase EDR1 [Vitis vinifera]
COG	YP_003797667.1	7E-16	putative serine/threonine protein kinase
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	0	Serine/threonine-protein kinase EDR1
trEMBL	tr\|F6HTV6\|F6HTV6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58117.1}
TAIR10	AT1G08720.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	47837923	47868354	+
GWHAAZE00000007	mRNA	47837923	47868354	+
GWHAAZE00000007	exon	47837923	47838318	+
GWHAAZE00000007	exon	47840845	47841267	+
GWHAAZE00000007	exon	47847929	47848032	+
GWHAAZE00000007	exon	47849856	47851015	+
GWHAAZE00000007	exon	47851870	47851910	+
GWHAAZE00000007	exon	47852657	47852725	+
GWHAAZE00000007	exon	47853160	47853260	+
GWHAAZE00000007	exon	47853537	47853615	+
GWHAAZE00000007	exon	47853730	47853828	+
GWHAAZE00000007	exon	47854349	47854398	+
GWHAAZE00000007	exon	47857718	47857894	+
GWHAAZE00000007	exon	47859406	47859526	+
GWHAAZE00000007	exon	47865093	47865158	+
GWHAAZE00000007	exon	47866692	47866768	+
GWHAAZE00000007	exon	47868354	47868354	+
GWHAAZE00000007	CDS	47837923	47838318	+
GWHAAZE00000007	CDS	47840845	47841267	+
GWHAAZE00000007	CDS	47847929	47848032	+
GWHAAZE00000007	CDS	47849856	47851015	+
GWHAAZE00000007	CDS	47851870	47851910	+
GWHAAZE00000007	CDS	47852657	47852725	+
GWHAAZE00000007	CDS	47853160	47853260	+
GWHAAZE00000007	CDS	47853537	47853615	+
GWHAAZE00000007	CDS	47853730	47853828	+
GWHAAZE00000007	CDS	47854349	47854398	+
GWHAAZE00000007	CDS	47857718	47857894	+
GWHAAZE00000007	CDS	47859406	47859526	+
GWHAAZE00000007	CDS	47865093	47865158	+
GWHAAZE00000007	CDS	47866692	47866768	+
GWHAAZE00000007	CDS	47868354	47868354	+

Transcript Sequence
>GWHTAAZE024735 ATGAAACACATTTTCAAGAAGCTTCACATAGGAAGCAACCACGACCCTAATCGTCCCACAGAAACTCCTTCTCCTGTTCCTCAATCCGTATCATCTCCCTCCGATCACCGTACATCCGCCGCTCCCGCTAGTCCCTCAACTTCTTCTCCATCGACGGCTACCGTTCAGTCTGGAACTCCCGCGGCGGTGAATCGCCAGGAGTATTACTCGTCGGAAGAGGAGTACCAGGTCCAGCTAGCCCTAGCTCTCAGTGTCTCCGGTCGAGACTCTGGCGATGATCCGGAGAAGGATCAGATCCGCGCGGCGACTCTGCTGAGTTTGGGAGGGGGCAATCGGACTGATTCGGTAAGGGAGAGAGGTGAAGCCGCCGCGGACGAGTTGTCAAGACAGTATTGGGATTACGGTGTCCTTGACTACGAAGAGAAAGTGGTGAATGGTTTCTATGACGTCTATGGGCTCTCAGAAAATCCAGGAATCCAAGGAAAAATGCCATCTCTCATGGATCTTGAATCCAATGCTGGGAATTCGGGCTTTGAAGTTATAGTGGTTAACAGAACAATTGATCCTGCCCTAGAGGAGTTGTTGCAGATTGCACACTGTGTTGCATTAGACTGCCCTAAGGGCGAGGTTAGTCTTCTGGTACAGAGGCTTGCTGAAATTGTTACAGAACACATGGGTGGGCCAGTTAAGGATGCGAATATTGTGTTGGCACGATGGATGGAAAGAAGCACAGAGTTGAGAAAATCTCTTCACACTAGCGTATTGCCGATTGGAACGTTAAAGATTGGGTTGTCTCGTCATCGTGCTTTGCTTTTCAAGGTATTGGCTGACAATGTTGGAATAACTTGTAGACTTGTAAAGGGTAATCATTACACTGGCAGTGAAGATGATGCACTCAATGTCATAAAGTTAACAGATGAAAGTGAATTTCTGGTTGATCTTATGGGAGCCCCTGGCTCACTCATACCAGCTGAAATTTTCAGCACGAAGGAGGCATCCTTTAAGTCCTACAACCCAATAGTGAACAAACTCCCAACTCTTCTGCCAACTAAGGACTCTGGCCTGGTTTACACAAGACCAACTTTACCCGGTCAATACGAAGGTAGTAATCAAAGCTGTGTGACCTCAAATGGTTTGCCTCTGGGTAGAAAGTCAAGTTCCAAAAATAAAGAATCTCTGTCATCAGTCTCACAAGCAACTACTGAAATTGGGGTGGGTTCGTCTGGGTTTAAAAATAAAATGGCTACCACGAACCAGTTGGATCATGTTCCTTCTTCAGCAATTGGCACTTCTCTATATAAAGGGGGTCGAGGGCCTAATGCTGTTGGTGATGGCTTGAGGATGAATGTGAACGTAGTCCCATATAACCAAAACAGCACAGAGGACACTAAAAATCTTTTTGCTGATCTTAATCCCTTCCAGATAAAAGGATCTGGCAAAGCCTCGATGCAGAATAATAATCCCACCGAGAATAGAGTTGAGGACTTTCAGAGGCCGAAAAATAGTGTTGTCTCTGGTCGACCTCCTCAACCATTAATGTGGAAGAACCGTTACCCTTGCAATGAGATACCCAAGAAAAAAGAAAATGATTTTGTGGAGGGCCTCTCTGCAAAAAACAATTATGAAACGAATGATTATCATAATATGTCATTAGCTTCTTCCAGCTCTGTTGCGTCAGAAAGAGTTTACACTGACGATTTTAAGTTACCCGATAATTCATATCCAGCTCCTAGGGAAAACAGTGATAGGGTTTCTTCTAGTGGGTGGAATTCATCATTGGAGGATGATCAAAGAAGAAATTATAAGGAGGAATATCAAAGGGATGCAGACTTTGTGCACAATGAAGAGTTAAACAATGAAAACAGGCAAAAAAAGAGTAGCATTAGCCTGAATGATCGTAGGAAGTCCACACAAGATAGATTTATGGGAACCAGTTTCAAATTTATGGATCCAGAAAGTCCGAGCTCGTCATTTGATTCTAGTGCAAGTCATGTTCATTCAGTGGTAGATGATGTGGTAGATGATGTCAGCGAATGTGAAATTCCATGGGAAGATCTAGTTATTGGTGAGAGGATTGGACTAGGTTCATATGGAGAGGTCTTCCATGCTGATTGGAATGGCACTGAAGTTGCGGTGAAGAAGTTCCTTGACCAGGACTTTTCAGGGGCTGCTCTGGCCGAGTTCAAGAGAGAAGTACGCATAATGCAGAGATTACGCAATCCAAATGTTGTTCTTTTTATGGGTGCTGTGACTCGCCCACCAAACCTTTCGATCATTACAGAGTTTCTCCCCAGAGGAAGCTTATATCGTCTTATTCATCGCCCTCATTCTCAAATTGATGAAAAACGTAGAATCAAAATGGCTCTTGATGTGGCGAAGGGAATGAACTGCTTGCACACTAGCATACCAACTATTGTTCACCGTGATTTGAAGTCACCAAATCTGCTTGTTGATAATAATTGGAATGTCAAGCCTGAGTGGATGGCACCAGAGGTTCTACGCAACGAAAATTCAAATGAGAAGTGTGACGTATATAGCTTTGGCGTCATACTGTGGGAGCTTGCAACTCTAAGATTGCCTTGGAGTGGGATGAACCCGATGCAGGTAGTGGGTGCAGTTGGTTTCCAAAATCGTCGCCTTGACATCCCCAAGGACGTTGATCCTGTGGTCGCTAGGATTATTTGGCAATGTTGGCAAACGGACCCAAACTTGCGGCCATCGTTCGCACAGCTGACTGTGGCTCTAAAGCCGCTACAACAGCTGGGCATCCCACCACATATGGACCAACCAACCTCAGCACCACTGCCACAAGAGATCTCAGTAATTTCTGTGGTCGACTCGACGATATCCCGACCCCAAGCTCGATCTCCTCCTCCTCCAACACAGGTACTTACCAAGCAGTTGGATAGAGAAAAGTCCAACAAAGCTGGAAATTCCTCAGGTCATCGTCATTGGAGAGCTTGA

Network for GWHGAAZE024701

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14381.7	EDR1	124	322	6.90E-74
PF07714.18	PK_Tyr_Ser-Thr	687	824	3.70E-27

Protein Sequence

>GWHPAAZE024719
MKHIFKKLHIGSNHDPNRPTETPSPVPQSVSSPSDHRTSAAPASPSTSSPSTATVQSGTPAAVNRQEYYSSEEEYQVQLALALSVSGRDSGDDPEKDQIRAATLLSLGGGNRTDSVRERGEAAADELSRQYWDYGVLDYEEKVVNGFYDVYGLSENPGIQGKMPSLMDLESNAGNSGFEVIVVNRTIDPALEELLQIAHCVALDCPKGEVSLLVQRLAEIVTEHMGGPVKDANIVLARWMERSTELRKSLHTSVLPIGTLKIGLSRHRALLFKVLADNVGITCRLVKGNHYTGSEDDALNVIKLTDESEFLVDLMGAPGSLIPAEIFSTKEASFKSYNPIVNKLPTLLPTKDSGLVYTRPTLPGQYEGSNQSCVTSNGLPLGRKSSSKNKESLSSVSQATTEIGVGSSGFKNKMATTNQLDHVPSSAIGTSLYKGGRGPNAVGDGLRMNVNVVPYNQNSTEDTKNLFADLNPFQIKGSGKASMQNNNPTENRVEDFQRPKNSVVSGRPPQPLMWKNRYPCNEIPKKKENDFVEGLSAKNNYETNDYHNMSLASSSSVASERVYTDDFKLPDNSYPAPRENSDRVSSSGWNSSLEDDQRRNYKEEYQRDADFVHNEELNNENRQKKSSISLNDRRKSTQDRFMGTSFKFMDPESPSSSFDSSASHVHSVVDDVVDDVSECEIPWEDLVIGERIGLGSYGEVFHADWNGTEVAVKKFLDQDFSGAALAEFKREVRIMQRLRNPNVVLFMGAVTRPPNLSIITEFLPRGSLYRLIHRPHSQIDEKRRIKMALDVAKGMNCLHTSIPTIVHRDLKSPNLLVDNNWNVKPEWMAPEVLRNENSNEKCDVYSFGVILWELATLRLPWSGMNPMQVVGAVGFQNRRLDIPKDVDPVVARIIWQCWQTDPNLRPSFAQLTVALKPLQQLGIPPHMDQPTSAPLPQEISVISVVDSTISRPQARSPPPPTQVLTKQLDREKSNKAGNSSGHRHWRA

Gene family

Gene family	subfamily
Protein Kinases Family	TKL_CTR1-DRK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.344
	SRR3591706	second leaf	10.518
	SRR3591707	mature leaf	14.389
	SRR3591708	Shoot apex	13.370
	SRR3591709	Stem	29.158
	SRR3591710	White floral bud	29.866
	SRR3591711	White flower	28.116
	SRR3591712	Green floral bud	17.703
	SRR3591713	Yellow flower	27.028
SRP173429	SRR8316895	Juvenile bud stage	14.162
	SRR8316896	Juvenile bud stage	20.262
	SRR8316897	Juvenile bud stage	9.433
	SRR8316894	Third green stage	8.713
	SRR8316900	Third green stage	20.504
	SRR8316901	Third green stage	22.576
	SRR8316898	Complete white stage	9.914
	SRR8316899	Complete white stage	27.968
	SRR8316903	Complete white stage	16.403
	SRR8316902	Silver flowering stage	11.839
	SRR8316904	Silver flowering stage	17.299
	SRR8316905	Silver flowering stage	8.706
	SRR8316906	Gold flowering stage	30.043
	SRR8316907	Gold flowering stage	24.687
	SRR8316908	Gold flowering stage	26.341
SRP132670	SRR6706286	Control	14.148
	SRR6706287	Light intensity 50%	15.055
	SRR6706288	Light intensity 20%	15.326
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.903
	CNS0095593	Slightly white alabastrum(diploid) 2	20.321
	CNS0095594	Slightly white alabastrum(diploid) 3	17.851
	CNS0095595	Whole white alabastrum(diploid) 2	15.436
	CNS0095596	Whole white alabastrum(diploid) 3	13.012
	CNS0095597	Whole white alabastrum(diploid) 4	15.584
	CNS0095598	Silvery flower (diploied) 1	24.481
	CNS0095599	Silvery flower (diploied) 2	21.010
	CNS0095600	Silvery flower (diploied) 3	34.861
	CNS0095601	Golden flower (diploid) 1	28.647
	CNS0095602	Golden flower (diploid) 2	36.944
	CNS0095603	Golden flower (diploid) 3	39.270
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.188
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.923
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.475
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.024
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.223
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.644
	CNS0095610	Silvery flower (diploied) 1	31.843
	CNS0095611	Silvery flower (diploied) 2	28.304
	CNS0095612	Silvery flower (diploied) 3	26.098
	CNS0095613	Golden flower (tetraploid) 1	20.835
	CNS0095614	Golden flower (tetraploid) 2	28.358
	CNS0095615	Golden flower (tetraploid) 3	31.264
CRA001975	CRR073297	Stem 1	24.645
	CRR073298	Stem 2	23.810
	CRR073299	Stem 3	21.053
	CRR073300	Leaf 1	29.149
	CRR073301	Leaf 2	25.078
	CRR073302	Leaf 3	19.408
	CRR073303	Juvenile bud 1	20.137
	CRR073304	Juvenile bud 2	16.060
	CRR073305	Juvenile bud 3	23.903
	CRR073306	Third green 1	13.086
	CRR073307	Third green 2	11.251
	CRR073308	Third green 3	14.156
	CRR073309	Second white 1	9.696
	CRR073310	Second white 2	17.121
	CRR073311	Second white 3	16.894
	CRR073312	Silver flowering 1	21.717
	CRR073313	Silver flowering 2	17.786
	CRR073314	Silver flowering 3	19.926
	CRR073315	Gold flowering 1	14.874
	CRR073316	Gold flowering 2	20.351
	CRR073317	Gold flowering 3	8.425
	CRR073318	Tawny withering 1	35.640
	CRR073319	Tawny withering 2	46.144
	CRR073320	Tawny withering 3	28.972