Gene detail

Detail information of GWHGAAZE024709

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663975.1	1.4287E-118	PREDICTED: probable serine/threonine-protein kinase NAK isoform X1 [Vitis vinifera]
COG	YP_003640725.1	5E-14	serine/threonine protein kinase
Swissprot	tr\|P43293\|NAK_ARATH	2E-99	Probable serine/threonine-protein kinase NAK
trEMBL	tr\|F6I6T4\|F6I6T4_VITVI	1E-118	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62652.1}
TAIR10	AT1G76360.1	2E-92	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	47981488	47985815	-
GWHAAZE00000007	mRNA	47981488	47985815	-
GWHAAZE00000007	exon	47985428	47985815	-
GWHAAZE00000007	exon	47984379	47984710	-
GWHAAZE00000007	exon	47983374	47983509	-
GWHAAZE00000007	exon	47982842	47982978	-
GWHAAZE00000007	exon	47982612	47982750	-
GWHAAZE00000007	exon	47981488	47981864	-
GWHAAZE00000007	CDS	47985428	47985815	-
GWHAAZE00000007	CDS	47984379	47984710	-
GWHAAZE00000007	CDS	47983374	47983509	-
GWHAAZE00000007	CDS	47982842	47982978	-
GWHAAZE00000007	CDS	47982612	47982750	-
GWHAAZE00000007	CDS	47981488	47981864	-

Transcript Sequence
>GWHTAAZE024743 ATGTTTTCCACAAAACGCCCTACAATGGCCGAGGTTGTGGTCGCACTTGAGCTTGCATTGGCAATGCAAGAAAGAACAGATTTTTCAATTTTTGAGGAGTTCTTTAATACAGGTGGCAACAGTGACAACCAAGAGAATGTTGAATCTTCTATCAAAGAGGAGGTGGTTATTAATAAAGCTTCTAACAACAAAGAGAATGCTGTTTCTTCTGTCAAAGAGCAGATGGTTATGGATGCTAATAAGGATTTGCGTCATTATGAGCAAATCAAAGGGATTATGCAGTTGGATGGTGCAAGAAATGATAAATCTCATGTAAAGCCTGCTAAGACAATGGCATTCACAAAGACAGTGCGGCAGTTCTTTTTTGGCACAAGTCGGGTGATCTCGGCCCTTACTGATGCAAAGCCAACAAAGAACAGCAAAAGCAACAATAACAATGGTGAGATCCCCACGCTGTCAAGTAAAAATGGGGACATTGTTCAGCATGTGCCTCCAAGTGGGCATATTGGGGATCCAAATTTGAAAATGTACACATTTGCTGAATTGGGAGCTGCAACATGGAACTTCAGAACTGATATGGTGGTGGGCGAGGGAAGTTTTGGAAAGGTTTTCAGAGGTTGGGTAGATGAGAAGACATACAAACCATCTAGTGTTGGCATGAGAATGCCCATCACCGTTAAAAAATTCAAGCTAGCCTTTTTAGAGCTTAGAGAGCTGAAGTCAAAGGTGGAATTCTGGGGAAAATTTAGTCATCCCAATCTCGTTAAGATCTTAGGATACTGCTTTGAAGACTTCAACTTCTTCCTCGTTCAAGAATACATGCGGAGGGGAAGCTTAGAAAACTACCTTTTCAAAAACTTCCGAAAACAACTTCCATGGGTTACAAGGCTTAAAATAGCTATAGAAGCAGCTCGAGGCCTTGCTTTCTTGCACAAATCAGATAAGGAAGTCACATACTACCAATTTAAGACCTCTAATATATTGCTGGATGGGGATTTTAATGCAAAGCTTTCTGATTTTAAACCCATAGAGTTCGAAACAGAAAGGAAGGACCTCGATTCACTAGTTACAAGAGTCCTTGCAAGAAAGCCAGAGACCAATGCTCATGCTGCTCCTGAGTACACGGCCACTGGTCATTTTAGTTTGAAGAGCGACGTGTACGGCTTTGGGGTTGTGTTGCTAGAAATACTGTCAGGCCAGCGTGCGTTTGATCAAAAACGGCCCTTGGAGAACCGAAACTTGGTGAAATGGTCCAGGCCTTTCCTGATTGATAAAAGAAGTCTGAAGAGGGTACTGGATCCACATTTGGATGGCCAATATTCTTTACAATGTGCATTAGAATATGCAGCACTCGTAGGAAAATGTGTTGCTTCAAACCCCCAAAACCGGCCATCAATGGAAAAAGTCTTGAAGACTTTAGAACATATCGATGCTATTGAGATTAAACCTGACAGTGATCAGCTGAAGGGCTTGACCAGAGCCAAGAGAAATAAACTCGGTTCAACCTGA

Network for GWHGAAZE024709

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	193	473	7.40E-35

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.627
	SRR3591706	second leaf	3.980
	SRR3591707	mature leaf	4.844
	SRR3591708	Shoot apex	2.384
	SRR3591709	Stem	5.153
	SRR3591710	White floral bud	5.890
	SRR3591711	White flower	9.777
	SRR3591712	Green floral bud	4.704
	SRR3591713	Yellow flower	3.643
SRP173429	SRR8316895	Juvenile bud stage	2.392
	SRR8316896	Juvenile bud stage	2.197
	SRR8316897	Juvenile bud stage	1.177
	SRR8316894	Third green stage	1.529
	SRR8316900	Third green stage	2.973
	SRR8316901	Third green stage	3.150
	SRR8316898	Complete white stage	1.217
	SRR8316899	Complete white stage	6.026
	SRR8316903	Complete white stage	3.219
	SRR8316902	Silver flowering stage	1.986
	SRR8316904	Silver flowering stage	2.797
	SRR8316905	Silver flowering stage	1.659
	SRR8316906	Gold flowering stage	4.128
	SRR8316907	Gold flowering stage	4.685
	SRR8316908	Gold flowering stage	5.269
SRP132670	SRR6706286	Control	7.666
	SRR6706287	Light intensity 50%	5.761
	SRR6706288	Light intensity 20%	6.550
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.751
	CNS0095593	Slightly white alabastrum(diploid) 2	1.207
	CNS0095594	Slightly white alabastrum(diploid) 3	1.460
	CNS0095595	Whole white alabastrum(diploid) 2	1.338
	CNS0095596	Whole white alabastrum(diploid) 3	0.725
	CNS0095597	Whole white alabastrum(diploid) 4	1.242
	CNS0095598	Silvery flower (diploied) 1	3.367
	CNS0095599	Silvery flower (diploied) 2	1.973
	CNS0095600	Silvery flower (diploied) 3	4.794
	CNS0095601	Golden flower (diploid) 1	2.950
	CNS0095602	Golden flower (diploid) 2	4.774
	CNS0095603	Golden flower (diploid) 3	4.963
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.899
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.729
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.820
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.683
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.296
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.261
	CNS0095610	Silvery flower (diploied) 1	6.339
	CNS0095611	Silvery flower (diploied) 2	6.361
	CNS0095612	Silvery flower (diploied) 3	3.292
	CNS0095613	Golden flower (tetraploid) 1	1.968
	CNS0095614	Golden flower (tetraploid) 2	3.849
	CNS0095615	Golden flower (tetraploid) 3	3.804
CRA001975	CRR073297	Stem 1	2.988
	CRR073298	Stem 2	3.817
	CRR073299	Stem 3	2.275
	CRR073300	Leaf 1	2.891
	CRR073301	Leaf 2	2.957
	CRR073302	Leaf 3	1.984
	CRR073303	Juvenile bud 1	2.443
	CRR073304	Juvenile bud 2	1.150
	CRR073305	Juvenile bud 3	2.631
	CRR073306	Third green 1	1.589
	CRR073307	Third green 2	0.669
	CRR073308	Third green 3	0.800
	CRR073309	Second white 1	0.191
	CRR073310	Second white 2	0.308
	CRR073311	Second white 3	1.189
	CRR073312	Silver flowering 1	0.121
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.201
	CRR073315	Gold flowering 1	1.974
	CRR073316	Gold flowering 2	5.846
	CRR073317	Gold flowering 3	1.161
	CRR073318	Tawny withering 1	3.669
	CRR073319	Tawny withering 2	1.301
	CRR073320	Tawny withering 3	1.317