Gene detail

Detail information of GWHGAAZE024806

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010559143.1	1.42148E-61	PREDICTED: homeobox-leucine zipper protein ATHB-7-like [Tarenaya hassleriana]
Swissprot	tr\|P46897\|ATHB7_ARATH	1E-51	Homeobox-leucine zipper protein ATHB-7
trEMBL	tr\|B9GR61\|B9GR61_POPTR	2E-61	Homeobox leucine zipper family protein {ECO:0000313\|EMBL:EEE81932.1}
TAIR10	AT2G46680.1	7E-34	homeobox 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	49792260	49793294	-
GWHAAZE00000007	mRNA	49792260	49793294	-
GWHAAZE00000007	exon	49792260	49792634	-
GWHAAZE00000007	exon	49792926	49793294	-
GWHAAZE00000007	CDS	49792926	49793294	-
GWHAAZE00000007	CDS	49792260	49792634	-

Transcript Sequence
>GWHTAAZE024840 ATGTTAGATGTAGGAGAATTATCAGCCTCTGATTCAGAGTTTTTCATCACCAACTTCAACCACAGCAATCATTCAGAACTAAACAAGAAGAGTGTTACTACCACAAAGAAGAGGTTCAGTGATGACCAAATCAGATCATTAGAGGTGATGTTCGAGTCCGAGTCCAAGCTCGAGCCAAAAAAGAAGCTGCAGCTGGCGAGGGAGCTGGGGCTGCAGCCACGCCAGGTTGCCATATGGTTCCAGAACAAGAGAGCTCGATACAAGTCTAAGCAGCTCGAGAGAGACTACAACATACTAATGGCCAATTACAACACTCTCAATTCCCAATTCGAAGCCCTCAAGAAAGAGAAACAGTCTCTAATTCTACAGTTGAGGAAGCTGCATGATCTAATGGATAAGTCTGGGGATGAAGGGCAACAAGTACAAGCGACAGCTAGAAACAGCGGTGGTAGCGGTGGGAGTGGCAGCAGCAGCAGTAGTGATGTGAAATCGGAGAATAATGGAGAAAGAGAAGATGGTAAATGGGTAGTATCATCATATTCAGATGAACATGATAGCAGCATAATAAAGGCAGAGTACTTGGGGGTTGACGAGGAAGCTGCAATTGCGGCGCTTAATGGTGTTTCATTCGAATCAAATGAAAATTGGGCTATTCTCGAATCTGATGGTCTATTGGACCACTGTACTACAACTACTACTAGTAGTACTAGTAGCAGTGACCAATGGTGGGATTTTTGGTCTTGA

Network for GWHGAAZE024806

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	35	88	1.20E-16
PF02183.19	HALZ	90	131	1.70E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	3.833
	SRR3591707	mature leaf	6.972
	SRR3591708	Shoot apex	1.294
	SRR3591709	Stem	1.189
	SRR3591710	White floral bud	2.942
	SRR3591711	White flower	3.744
	SRR3591712	Green floral bud	0.918
	SRR3591713	Yellow flower	8.174
SRP173429	SRR8316895	Juvenile bud stage	0.057
	SRR8316896	Juvenile bud stage	0.155
	SRR8316897	Juvenile bud stage	0.340
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	1.014
	SRR8316901	Third green stage	0.957
	SRR8316898	Complete white stage	0.162
	SRR8316899	Complete white stage	1.942
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.517
	SRR8316904	Silver flowering stage	0.876
	SRR8316905	Silver flowering stage	0.412
	SRR8316906	Gold flowering stage	2.751
	SRR8316907	Gold flowering stage	1.639
	SRR8316908	Gold flowering stage	1.545
SRP132670	SRR6706286	Control	3.636
	SRR6706287	Light intensity 50%	2.677
	SRR6706288	Light intensity 20%	2.360
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.348
	CNS0095593	Slightly white alabastrum(diploid) 2	0.596
	CNS0095594	Slightly white alabastrum(diploid) 3	1.098
	CNS0095595	Whole white alabastrum(diploid) 2	0.680
	CNS0095596	Whole white alabastrum(diploid) 3	0.712
	CNS0095597	Whole white alabastrum(diploid) 4	1.747
	CNS0095598	Silvery flower (diploied) 1	1.660
	CNS0095599	Silvery flower (diploied) 2	2.666
	CNS0095600	Silvery flower (diploied) 3	2.888
	CNS0095601	Golden flower (diploid) 1	5.172
	CNS0095602	Golden flower (diploid) 2	4.326
	CNS0095603	Golden flower (diploid) 3	3.444
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.183
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.209
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.448
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	2.204
	CNS0095611	Silvery flower (diploied) 2	0.448
	CNS0095612	Silvery flower (diploied) 3	0.257
	CNS0095613	Golden flower (tetraploid) 1	0.984
	CNS0095614	Golden flower (tetraploid) 2	4.292
	CNS0095615	Golden flower (tetraploid) 3	0.337
CRA001975	CRR073297	Stem 1	0.577
	CRR073298	Stem 2	0.938
	CRR073299	Stem 3	0.229
	CRR073300	Leaf 1	0.602
	CRR073301	Leaf 2	1.258
	CRR073302	Leaf 3	1.329
	CRR073303	Juvenile bud 1	0.819
	CRR073304	Juvenile bud 2	0.081
	CRR073305	Juvenile bud 3	1.150
	CRR073306	Third green 1	0.071
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.138
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.522
	CRR073314	Silver flowering 3	0.100
	CRR073315	Gold flowering 1	0.431
	CRR073316	Gold flowering 2	1.114
	CRR073317	Gold flowering 3	0.174
	CRR073318	Tawny withering 1	1.011
	CRR073319	Tawny withering 2	0.614
	CRR073320	Tawny withering 3	0.654