Gene detail

Detail information of GWHGAAZE024946

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009341299.1	2.61023E-95	PREDICTED: fructokinase-1-like, partial [Pyrus x bretschneideri]
COG	YP_002521328.1	9E-56	putative fructokinase
Swissprot	tr\|Q9FLH8\|SCRK7_ARATH	2E-90	Probable fructokinase-7
trEMBL	tr\|Q8H277\|Q8H277_SOLLC	3E-95	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc10g017620.2.1}
TAIR10	AT5G51830.1	2E-74	pfkB-like carbohydrate kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	52465187	52467758	-
GWHAAZE00000007	mRNA	52465187	52467758	-
GWHAAZE00000007	exon	52465187	52465315	-
GWHAAZE00000007	exon	52466010	52466207	-
GWHAAZE00000007	exon	52466875	52467087	-
GWHAAZE00000007	exon	52467468	52467758	-
GWHAAZE00000007	CDS	52467468	52467758	-
GWHAAZE00000007	CDS	52466875	52467087	-
GWHAAZE00000007	CDS	52466010	52466207	-
GWHAAZE00000007	CDS	52465187	52465315	-

Transcript Sequence
>GWHTAAZE024980 ATGGTGTGCGTGGTACTTCTTCAGGCTTGCCAAGAAATACATCCTCGATCAGCAAGAAGTGTTGGATCAGCATCATCACCAAGAACTTCATCTGTGGGGAGAGGAAGCTCTCTGGGGGGGAAGAATGACAACAATAATGAACAAAAAGAAGTAGGGCTGGTTGTTTGCTTTGGGGAAATGTTGATTGATTTTGTGCCAACTGTCTCTGGGGTTTCACTTGCTGATGCACCTGGCTTCAAGAAAGCACCTGGTGCCCCGCTAATGTTGCTGTTGACACTGCCAGATTGGGAGGTGGGTGAAGATGAATTTGGGCACATGTTGGCTGATATTTTGAAAGAGAACAATGTGGACAATTCTGGCATGCGGTTCGACGCAAATGCAAGGACAGCACTCGCATTTGTTACCCTCAGATCCGATGGAGAGCACGAATTCATGTTCTTTCGCAATCCAAGTGCCGATATGCTTCTTGCTCCCCCTGAACTCGATTGTAACCTTATTAACAAGGCAAGCATATTTCACTATGGATCAATAAGTTTGATCGATGAGCCATGTAAATCAGCACACTTAGTAGCAATGGAGGTTGCAAAGAAGTCAGGTTGCCTTCTCTCTTATGACCCTAATCTCAGATTGCCTCTCTGGCCCTCTGAAGATGCTGCTAGAAAGGGCATCATGAGCATTTGGGTTCAAGCTCACATTATTAAGGACGAAGAGAAATTAAAAGCAGCCCTAAAATTTGCAAATGTGTGTGGTGCTCTCACAGTGACACAAAAAGGAGCAATTCCTGCACTTCCCACAAAAGAAGCTGTTCTCCAAGTTCTCAACAAAAGCTAA

Network for GWHGAAZE024946

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00294.25	PfkB	98	234	1.30E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00847	E2.7.1.4, scrK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fructose and mannose metabolism	map00051
		Starch and sucrose metabolism	map00500
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.369
	SRR3591706	second leaf	5.409
	SRR3591707	mature leaf	0.434
	SRR3591708	Shoot apex	7.457
	SRR3591709	Stem	0.491
	SRR3591710	White floral bud	0.226
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.533
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.510
	SRR8316896	Juvenile bud stage	1.874
	SRR8316897	Juvenile bud stage	1.076
	SRR8316894	Third green stage	0.355
	SRR8316900	Third green stage	0.878
	SRR8316901	Third green stage	1.482
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.109
	SRR8316903	Complete white stage	0.112
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.175
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.565
	SRR6706287	Light intensity 50%	0.492
	SRR6706288	Light intensity 20%	0.413
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.057
	CNS0095593	Slightly white alabastrum(diploid) 2	1.299
	CNS0095594	Slightly white alabastrum(diploid) 3	2.270
	CNS0095595	Whole white alabastrum(diploid) 2	3.159
	CNS0095596	Whole white alabastrum(diploid) 3	3.058
	CNS0095597	Whole white alabastrum(diploid) 4	2.770
	CNS0095598	Silvery flower (diploied) 1	0.216
	CNS0095599	Silvery flower (diploied) 2	0.447
	CNS0095600	Silvery flower (diploied) 3	0.085
	CNS0095601	Golden flower (diploid) 1	0.494
	CNS0095602	Golden flower (diploid) 2	0.002
	CNS0095603	Golden flower (diploid) 3	0.035
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.360
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.077
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.249
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.924
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.013
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.904
	CNS0095610	Silvery flower (diploied) 1	0.264
	CNS0095611	Silvery flower (diploied) 2	0.112
	CNS0095612	Silvery flower (diploied) 3	0.158
	CNS0095613	Golden flower (tetraploid) 1	0.018
	CNS0095614	Golden flower (tetraploid) 2	0.110
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.902
	CRR073298	Stem 2	0.968
	CRR073299	Stem 3	0.314
	CRR073300	Leaf 1	0.745
	CRR073301	Leaf 2	1.090
	CRR073302	Leaf 3	0.207
	CRR073303	Juvenile bud 1	0.209
	CRR073304	Juvenile bud 2	0.045
	CRR073305	Juvenile bud 3	0.050
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.003
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.311
	CRR073319	Tawny withering 2	0.712
	CRR073320	Tawny withering 3	0.000