Gene detail

Detail information of GWHGAAZE024963

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007052026.1	0	Dihydrodipicolinate synthase isoform 1 [Theobroma cacao]
COG	YP_270348.1	1E-104	dihydrodipicolinate synthase
Swissprot	tr\|Q9FVC8\|DAPA2_ARATH	0	4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic (Precursor)
trEMBL	tr\|A0A061E1S6\|A0A061E1S6_THECC	0	Dihydrodipicolinate synthase isoform 1 {ECO:0000313\|EMBL:EOX96183.1}
TAIR10	AT2G45440.1	1E-167	dihydrodipicolinate synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	52684954	52689226	-
GWHAAZE00000007	mRNA	52684954	52689226	-
GWHAAZE00000007	exon	52689117	52689226	-
GWHAAZE00000007	exon	52686242	52686325	-
GWHAAZE00000007	exon	52684954	52685881	-
GWHAAZE00000007	CDS	52689117	52689226	-
GWHAAZE00000007	CDS	52686242	52686325	-
GWHAAZE00000007	CDS	52684954	52685881	-

Transcript Sequence
>GWHTAAZE024997 ATGTCGGTGGCGTATCAACAATTAGCTGCTTTCAAGAGCTATAGTAGTCCCTGTTTTGGGGAATCTGCTCTCCAAATTCCGTCTTTCACTCGTGCCGATCACTATAAGAGGAAGAATGCAAAATGGAGGTCCCCACAAGCAGCTGTAATCCCTCATTTTCATCTCCCAATGCGTAGTTTTGAAGTTAAAAACAGGACTTCAGCAGAGGAAATAAAGTCTCTGAGATTGATAACTGCCATCAAAACCCCATATCTACCAGACGGCAGATTCGATCTCGAGGCTTATGATGCCTTGGTCAACATGCAGATCGAAAATGGTGCTGAGGGTGTCATTGTTGGCGGAACCACCGGCGAAGGCCAGTTGATGAGCTGGGACGAACACATCATGCTAATCGGTCACACTGTCAATTGTTTTGGTGGGTCAATCAAAGTCATTGGAAACACCGGAAGTAACTCAACAAGAGAAGCAATACATGCAAGTGAACAAGGCTTTGCCGTTGGAATGCACGCTGCTTTACACATTAACCCTTACTATGGCAAAACCTCCTTAGACGGTTTGGTTTCTCATTTTGATAGCGTGCTCCCCATGGGTCCCACCATCATCTACAATGTCCCGTCAAGAACTGGTCAAGACATTCCGCCACATGTGATTTGCACCGTAGCACAAAACCCTAATTTAGCGGGCATTAAGGAATGTGTAGGAAATGATCGTGTGGATGAATATACAAGCAATGACATTGTTGTGTGGAGTGGGAATGATGATCAATGCCATGACTCAAGGTGGGACCATGGAGCTACGGGAGTTATATCAGTTACTAGCAACTTGGTCCCGGGTTTGATGCGACAACTCATGTTTAGGGGAAAGAACCTGTCATTAAATGCAAAGCTCATGCCATTGATCGAGTGGCTCTTTCAAGAGCCAAATCCCATTGGGTTAAATACCGCACTTGCTCAACTTGGGGTTGTGAGGCCGGTTTTTCGGCTACCATATGTTCCACTCCCTTGGGCCAAGAGGGTAGAGTTTGTGAACATAGTGAAGGATATTGGGCGAGAGAATTTTGTAGGAGAGAGAGATGTGGAGGTTCTTGATGACGACGACTTCATTTTGATTGGTCGGTATTAG

Network for GWHGAAZE024963

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00701.23	DHDPS	74	347	9.00E-93

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01714	dapA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of amino acids	map01230
		Lysine biosynthesis	map00300
		Monobactam biosynthesis	map00261

Gene Ontology

GO term	Ontology	Name
GO:0009089	biological_process	lysine biosynthetic process via diaminopimelate
GO:0016829	molecular_function	lyase activity
GO:0003824	molecular_function	catalytic activity
GO:0008840	molecular_function	4-hydroxy-tetrahydrodipicolinate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.279
	SRR3591706	second leaf	14.904
	SRR3591707	mature leaf	12.904
	SRR3591708	Shoot apex	30.450
	SRR3591709	Stem	15.124
	SRR3591710	White floral bud	13.310
	SRR3591711	White flower	18.210
	SRR3591712	Green floral bud	30.255
	SRR3591713	Yellow flower	8.677
SRP173429	SRR8316895	Juvenile bud stage	22.365
	SRR8316896	Juvenile bud stage	26.551
	SRR8316897	Juvenile bud stage	13.250
	SRR8316894	Third green stage	10.860
	SRR8316900	Third green stage	36.605
	SRR8316901	Third green stage	27.264
	SRR8316898	Complete white stage	5.270
	SRR8316899	Complete white stage	33.024
	SRR8316903	Complete white stage	9.176
	SRR8316902	Silver flowering stage	2.186
	SRR8316904	Silver flowering stage	6.098
	SRR8316905	Silver flowering stage	2.161
	SRR8316906	Gold flowering stage	8.278
	SRR8316907	Gold flowering stage	5.858
	SRR8316908	Gold flowering stage	9.059
SRP132670	SRR6706286	Control	31.056
	SRR6706287	Light intensity 50%	31.347
	SRR6706288	Light intensity 20%	32.817
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.958
	CNS0095593	Slightly white alabastrum(diploid) 2	27.772
	CNS0095594	Slightly white alabastrum(diploid) 3	18.984
	CNS0095595	Whole white alabastrum(diploid) 2	22.248
	CNS0095596	Whole white alabastrum(diploid) 3	27.446
	CNS0095597	Whole white alabastrum(diploid) 4	19.639
	CNS0095598	Silvery flower (diploied) 1	22.146
	CNS0095599	Silvery flower (diploied) 2	15.815
	CNS0095600	Silvery flower (diploied) 3	18.483
	CNS0095601	Golden flower (diploid) 1	12.190
	CNS0095602	Golden flower (diploid) 2	14.798
	CNS0095603	Golden flower (diploid) 3	16.698
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.683
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.452
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.549
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.828
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.836
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.984
	CNS0095610	Silvery flower (diploied) 1	16.589
	CNS0095611	Silvery flower (diploied) 2	20.761
	CNS0095612	Silvery flower (diploied) 3	10.394
	CNS0095613	Golden flower (tetraploid) 1	7.566
	CNS0095614	Golden flower (tetraploid) 2	12.022
	CNS0095615	Golden flower (tetraploid) 3	6.248
CRA001975	CRR073297	Stem 1	32.943
	CRR073298	Stem 2	30.979
	CRR073299	Stem 3	38.826
	CRR073300	Leaf 1	35.021
	CRR073301	Leaf 2	34.968
	CRR073302	Leaf 3	40.474
	CRR073303	Juvenile bud 1	40.486
	CRR073304	Juvenile bud 2	31.784
	CRR073305	Juvenile bud 3	40.562
	CRR073306	Third green 1	2.195
	CRR073307	Third green 2	2.529
	CRR073308	Third green 3	2.139
	CRR073309	Second white 1	5.530
	CRR073310	Second white 2	3.185
	CRR073311	Second white 3	3.574
	CRR073312	Silver flowering 1	4.082
	CRR073313	Silver flowering 2	3.998
	CRR073314	Silver flowering 3	6.041
	CRR073315	Gold flowering 1	18.105
	CRR073316	Gold flowering 2	20.122
	CRR073317	Gold flowering 3	22.972
	CRR073318	Tawny withering 1	20.069
	CRR073319	Tawny withering 2	21.752
	CRR073320	Tawny withering 3	18.799