Gene detail

Detail information of GWHGAAZE025026

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278670.1	5.53628E-96	PREDICTED: zinc finger protein ZAT4-like [Vitis vinifera]
Swissprot	tr\|Q9M202\|ZAT9_ARATH	2E-69	Zinc finger protein ZAT9
trEMBL	tr\|F6GV56\|F6GV56_VITVI	2E-96	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43838.1}
TAIR10	AT3G60580.1	1E-46	C2H2-like zinc finger protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	53767171	53768271	-
GWHAAZE00000007	mRNA	53767171	53768271	-
GWHAAZE00000007	exon	53768097	53768271	-
GWHAAZE00000007	exon	53767672	53767994	-
GWHAAZE00000007	exon	53767171	53767602	-
GWHAAZE00000007	CDS	53768097	53768271	-
GWHAAZE00000007	CDS	53767672	53767994	-
GWHAAZE00000007	CDS	53767171	53767602	-

Transcript Sequence
>GWHTAAZE025060 ATGGACAAACACAAGTGCAAGCTCTGCTTAAAAACCTTCATTAATGGCAGAGCATTAGGGGGTCATATGAGATCTCACATGCTCAATCTCTACACATCTCAAAAAGAAGATCAACTCAGTGAAAACAACACCGAGTCGACTCGGTCTGAAAACGAAAACGAAAACGAAAATGAAGGCTCTGTCGTCGTGCAAGACTCAGCGAGCGAGACCGAGTCATCTAAAAATCCAATCCGAAGAAGGTCGAAACGGATTCGGAAATCGGTAACATCAAATCCTCAATGGCAGCTTCAATCACAGCAGTCGAAAAGACCAACAAGTTCAAGCAAGCTTAGCAAGACCGAGTCAGAACCGGTGAGTTCAATCTCGGACACTACGCCTGAAGAGAATGTGGCGTTTTGTTTGATGATGTTATCCAGAGATAAATGGAAGAGAGAAGAAATTGAGGACGATGACGAAGAGTTTGTGGTTGAAGCTGAGAAATACGCGTATATTGACGCTAAATCTACACGTGCTCGAGCTAAGTACAAGTGCGACACTTGCAACAAGGTGTTTAAATCATATCAAGCGCTAGGCGGACACAGGGCGAGCCATAAGAAAATAAAATTAAATCAGAATCAAAATGATGTATTAGAAAATGAGAATGGAGGTAACCCGATAACCGTAGAAGAGAAAATACATGAGTGTCCTGTTTGTTACAGAGTGTTTTCATCCGGCCAAGCGCTTGGTGGGCATAAGAGATCGCATGTTATTGGTTCATCATCGTCAACTGTTGTTCCGGTTGTGGATCGGGTTAAACCTGTCCCCAAACACGGGGAGAATTTGATTGATCTTGATCTTAATCTTCCTGCTCCAATTGATGATGATGATTATAGCCAAATTGAACTTTCCGCTGTTTCTGATGCTGAATTTGTTAATCCTATGAAGAGATGA

Network for GWHGAAZE025026

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13912.7	zf-C2H2_6	4	27	1.20E-06
PF13912.7	zf-C2H2_6	175	199	6.40E-13
PF13912.7	zf-C2H2_6	226	248	1.50E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.103
	SRR3591706	second leaf	0.318
	SRR3591707	mature leaf	0.626
	SRR3591708	Shoot apex	0.741
	SRR3591709	Stem	0.974
	SRR3591710	White floral bud	14.289
	SRR3591711	White flower	8.901
	SRR3591712	Green floral bud	18.337
	SRR3591713	Yellow flower	0.822
SRP173429	SRR8316895	Juvenile bud stage	5.650
	SRR8316896	Juvenile bud stage	13.501
	SRR8316897	Juvenile bud stage	6.088
	SRR8316894	Third green stage	4.923
	SRR8316900	Third green stage	15.107
	SRR8316901	Third green stage	14.417
	SRR8316898	Complete white stage	3.681
	SRR8316899	Complete white stage	7.578
	SRR8316903	Complete white stage	7.312
	SRR8316902	Silver flowering stage	3.037
	SRR8316904	Silver flowering stage	2.385
	SRR8316905	Silver flowering stage	0.537
	SRR8316906	Gold flowering stage	0.436
	SRR8316907	Gold flowering stage	0.447
	SRR8316908	Gold flowering stage	0.763
SRP132670	SRR6706286	Control	6.963
	SRR6706287	Light intensity 50%	5.688
	SRR6706288	Light intensity 20%	5.062
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.683
	CNS0095593	Slightly white alabastrum(diploid) 2	13.032
	CNS0095594	Slightly white alabastrum(diploid) 3	20.866
	CNS0095595	Whole white alabastrum(diploid) 2	12.293
	CNS0095596	Whole white alabastrum(diploid) 3	20.983
	CNS0095597	Whole white alabastrum(diploid) 4	13.091
	CNS0095598	Silvery flower (diploied) 1	1.564
	CNS0095599	Silvery flower (diploied) 2	1.350
	CNS0095600	Silvery flower (diploied) 3	3.118
	CNS0095601	Golden flower (diploid) 1	0.673
	CNS0095602	Golden flower (diploid) 2	0.549
	CNS0095603	Golden flower (diploid) 3	1.350
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.011
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.608
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.687
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.734
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.789
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.876
	CNS0095610	Silvery flower (diploied) 1	4.791
	CNS0095611	Silvery flower (diploied) 2	1.173
	CNS0095612	Silvery flower (diploied) 3	0.492
	CNS0095613	Golden flower (tetraploid) 1	0.518
	CNS0095614	Golden flower (tetraploid) 2	2.810
	CNS0095615	Golden flower (tetraploid) 3	0.825
CRA001975	CRR073297	Stem 1	10.862
	CRR073298	Stem 2	12.172
	CRR073299	Stem 3	7.472
	CRR073300	Leaf 1	10.721
	CRR073301	Leaf 2	12.153
	CRR073302	Leaf 3	10.838
	CRR073303	Juvenile bud 1	8.143
	CRR073304	Juvenile bud 2	6.111
	CRR073305	Juvenile bud 3	4.447
	CRR073306	Third green 1	1.422
	CRR073307	Third green 2	2.229
	CRR073308	Third green 3	2.826
	CRR073309	Second white 1	0.192
	CRR073310	Second white 2	0.631
	CRR073311	Second white 3	0.345
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.050
	CRR073314	Silver flowering 3	0.069
	CRR073315	Gold flowering 1	0.057
	CRR073316	Gold flowering 2	0.410
	CRR073317	Gold flowering 3	0.432
	CRR073318	Tawny withering 1	0.463
	CRR073319	Tawny withering 2	0.847
	CRR073320	Tawny withering 3	0.000