Detail information of GWHGAAZE025032


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009631123.10PREDICTED: CCR4-NOT transcription complex subunit 1 isoform X1 [Nicotiana tomentosiformis]
trEMBLtr|A0A068UME7|A0A068UME7_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313|EMBL:CDP09482.1}
TAIR10AT1G02080.20transcription regulators

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5386198153886989-
GWHAAZE00000007mRNA5386198153886989-
GWHAAZE00000007exon5388666553886989-
GWHAAZE00000007exon5388443253884608-
GWHAAZE00000007exon5388387353884101-
GWHAAZE00000007exon5388332853883655-
GWHAAZE00000007exon5388211953882232-
GWHAAZE00000007exon5388186153881989-
GWHAAZE00000007exon5387876353878954-
GWHAAZE00000007exon5387847453878668-
GWHAAZE00000007exon5387542953875566-
GWHAAZE00000007exon5387519953875288-
GWHAAZE00000007exon5387487453875115-
GWHAAZE00000007exon5387351353873616-
GWHAAZE00000007exon5387240153872495-
GWHAAZE00000007exon5387209253872325-
GWHAAZE00000007exon5387070253870914-
GWHAAZE00000007exon5387026353870344-
GWHAAZE00000007exon5387004853870115-
GWHAAZE00000007exon5386654953866694-
GWHAAZE00000007exon5386426253864370-
GWHAAZE00000007exon5386402153864167-
GWHAAZE00000007exon5386365253863903-
GWHAAZE00000007exon5386330553863544-
GWHAAZE00000007exon5386307753863166-
GWHAAZE00000007exon5386273153862816-
GWHAAZE00000007exon5386253353862638-
GWHAAZE00000007exon5386234553862440-
GWHAAZE00000007exon5386198153862238-
GWHAAZE00000007CDS5388666553886989-
GWHAAZE00000007CDS5388443253884608-
GWHAAZE00000007CDS5388387353884101-
GWHAAZE00000007CDS5388332853883655-
GWHAAZE00000007CDS5388211953882232-
GWHAAZE00000007CDS5388186153881989-
GWHAAZE00000007CDS5387876353878954-
GWHAAZE00000007CDS5387847453878668-
GWHAAZE00000007CDS5387542953875566-
GWHAAZE00000007CDS5387519953875288-
GWHAAZE00000007CDS5387487453875115-
GWHAAZE00000007CDS5387351353873616-
GWHAAZE00000007CDS5387240153872495-
GWHAAZE00000007CDS5387209253872325-
GWHAAZE00000007CDS5387070253870914-
GWHAAZE00000007CDS5387026353870344-
GWHAAZE00000007CDS5387004853870115-
GWHAAZE00000007CDS5386654953866694-
GWHAAZE00000007CDS5386426253864370-
GWHAAZE00000007CDS5386402153864167-
GWHAAZE00000007CDS5386365253863903-
GWHAAZE00000007CDS5386330553863544-
GWHAAZE00000007CDS5386307753863166-
GWHAAZE00000007CDS5386273153862816-
GWHAAZE00000007CDS5386253353862638-
GWHAAZE00000007CDS5386234553862440-
GWHAAZE00000007CDS5386198153862238-
Transcript Sequence

Network for GWHGAAZE025032

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16418.6CNOT1_HEAT5286423.30E-24
PF16417.6CNOT1_TTP_bind6738352.50E-65
PF16415.6CNOT1_CAF1_bind98411363.30E-57
PF16415.6CNOT1_CAF1_bind115412281.10E-22
PF12842.8DUF3819133914615.30E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12604CNOT1, NOT1 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.923
SRR3591706second leaf2.344
SRR3591707mature leaf2.053
SRR3591708Shoot apex3.286
SRR3591709Stem4.834
SRR3591710White floral bud6.404
SRR3591711White flower6.193
SRR3591712Green floral bud5.074
SRR3591713Yellow flower2.202
SRP173429 SRR8316895Juvenile bud stage 5.343
SRR8316896Juvenile bud stage 6.732
SRR8316897Juvenile bud stage 2.984
SRR8316894Third green stage 3.691
SRR8316900Third green stage 6.454
SRR8316901Third green stage 5.473
SRR8316898Complete white stage 1.426
SRR8316899Complete white stage 4.064
SRR8316903Complete white stage 5.610
SRR8316902Silver flowering stage1.419
SRR8316904Silver flowering stage3.614
SRR8316905Silver flowering stage1.286
SRR8316906Gold flowering stage 2.000
SRR8316907Gold flowering stage 2.770
SRR8316908Gold flowering stage 1.986
SRP132670SRR6706286Control5.106
SRR6706287Light intensity 50%6.288
SRR6706288Light intensity 20%7.329
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.811
CNS0095593Slightly white alabastrum(diploid) 21.284
CNS0095594Slightly white alabastrum(diploid) 31.815
CNS0095595Whole white alabastrum(diploid) 21.502
CNS0095596Whole white alabastrum(diploid) 31.033
CNS0095597Whole white alabastrum(diploid) 41.241
CNS0095598Silvery flower (diploied) 13.509
CNS0095599Silvery flower (diploied) 22.276
CNS0095600Silvery flower (diploied) 36.363
CNS0095601Golden flower (diploid) 12.524
CNS0095602Golden flower (diploid) 26.262
CNS0095603Golden flower (diploid) 36.568
CNS0095604Slightly white alabastrum(tetraploid) 12.071
CNS0095605Slightly white alabastrum(tetraploid) 20.951
CNS0095606Slightly white alabastrum(tetraploid) 36.688
CNS0095607Whole white alabastrum(tetraploid) 11.158
CNS0095608Whole white alabastrum(tetraploid) 21.149
CNS0095609Whole white alabastrum(tetraploid) 33.919
CNS0095610Silvery flower (diploied) 14.360
CNS0095611Silvery flower (diploied) 26.223
CNS0095612Silvery flower (diploied) 33.469
CNS0095613Golden flower (tetraploid) 10.897
CNS0095614Golden flower (tetraploid) 22.233
CNS0095615Golden flower (tetraploid) 33.384
CRA001975CRR073297Stem 15.208
CRR073298Stem 24.489
CRR073299Stem 32.459
CRR073300Leaf 15.088
CRR073301Leaf 24.048
CRR073302Leaf 32.153
CRR073303Juvenile bud 12.067
CRR073304Juvenile bud 21.056
CRR073305Juvenile bud 34.474
CRR073306Third green 11.345
CRR073307Third green 20.665
CRR073308Third green 31.419
CRR073309Second white 10.548
CRR073310Second white 20.460
CRR073311Second white 31.168
CRR073312Silver flowering 10.264
CRR073313Silver flowering 20.718
CRR073314Silver flowering 30.332
CRR073315Gold flowering 10.312
CRR073316Gold flowering 20.514
CRR073317Gold flowering 30.625
CRR073318Tawny withering 11.652
CRR073319Tawny withering 21.057
CRR073320Tawny withering 31.404