Home
Network
Network Search
Module Search
Search
Tools
Blast
Motif
GSEA
Heatmap Analysis
Jbrowse
Gene family
Cytochrome p450
TF Family
Protein Kinases
Ubiquitin
EAR family
Pathway
Download
Detail information of GWHGAAZE025032
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_009631123.1
0
PREDICTED: CCR4-NOT transcription complex subunit 1 isoform X1 [Nicotiana tomentosiformis]
trEMBL
tr|A0A068UME7|A0A068UME7_COFCA
0
Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313|EMBL:CDP09482.1}
TAIR10
AT1G02080.2
0
transcription regulators
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000007
gene
53861981
53886989
-
GWHAAZE00000007
mRNA
53861981
53886989
-
GWHAAZE00000007
exon
53886665
53886989
-
GWHAAZE00000007
exon
53884432
53884608
-
GWHAAZE00000007
exon
53883873
53884101
-
GWHAAZE00000007
exon
53883328
53883655
-
GWHAAZE00000007
exon
53882119
53882232
-
GWHAAZE00000007
exon
53881861
53881989
-
GWHAAZE00000007
exon
53878763
53878954
-
GWHAAZE00000007
exon
53878474
53878668
-
GWHAAZE00000007
exon
53875429
53875566
-
GWHAAZE00000007
exon
53875199
53875288
-
GWHAAZE00000007
exon
53874874
53875115
-
GWHAAZE00000007
exon
53873513
53873616
-
GWHAAZE00000007
exon
53872401
53872495
-
GWHAAZE00000007
exon
53872092
53872325
-
GWHAAZE00000007
exon
53870702
53870914
-
GWHAAZE00000007
exon
53870263
53870344
-
GWHAAZE00000007
exon
53870048
53870115
-
GWHAAZE00000007
exon
53866549
53866694
-
GWHAAZE00000007
exon
53864262
53864370
-
GWHAAZE00000007
exon
53864021
53864167
-
GWHAAZE00000007
exon
53863652
53863903
-
GWHAAZE00000007
exon
53863305
53863544
-
GWHAAZE00000007
exon
53863077
53863166
-
GWHAAZE00000007
exon
53862731
53862816
-
GWHAAZE00000007
exon
53862533
53862638
-
GWHAAZE00000007
exon
53862345
53862440
-
GWHAAZE00000007
exon
53861981
53862238
-
GWHAAZE00000007
CDS
53886665
53886989
-
GWHAAZE00000007
CDS
53884432
53884608
-
GWHAAZE00000007
CDS
53883873
53884101
-
GWHAAZE00000007
CDS
53883328
53883655
-
GWHAAZE00000007
CDS
53882119
53882232
-
GWHAAZE00000007
CDS
53881861
53881989
-
GWHAAZE00000007
CDS
53878763
53878954
-
GWHAAZE00000007
CDS
53878474
53878668
-
GWHAAZE00000007
CDS
53875429
53875566
-
GWHAAZE00000007
CDS
53875199
53875288
-
GWHAAZE00000007
CDS
53874874
53875115
-
GWHAAZE00000007
CDS
53873513
53873616
-
GWHAAZE00000007
CDS
53872401
53872495
-
GWHAAZE00000007
CDS
53872092
53872325
-
GWHAAZE00000007
CDS
53870702
53870914
-
GWHAAZE00000007
CDS
53870263
53870344
-
GWHAAZE00000007
CDS
53870048
53870115
-
GWHAAZE00000007
CDS
53866549
53866694
-
GWHAAZE00000007
CDS
53864262
53864370
-
GWHAAZE00000007
CDS
53864021
53864167
-
GWHAAZE00000007
CDS
53863652
53863903
-
GWHAAZE00000007
CDS
53863305
53863544
-
GWHAAZE00000007
CDS
53863077
53863166
-
GWHAAZE00000007
CDS
53862731
53862816
-
GWHAAZE00000007
CDS
53862533
53862638
-
GWHAAZE00000007
CDS
53862345
53862440
-
GWHAAZE00000007
CDS
53861981
53862238
-
Transcript Sequence
>GWHTAAZE025066 ATGGAGTTGATGCCAGATGCGCACACAAACAAATTCACAGGTGTTGAGCTGCATGCACCGACCAACTCTTTGAGCTGCCAGATAAATACCCCCTACAACGTAACTACTCTCCACCATTCTCTCCGATTCTCATTGCACACAACAATCACCCCTAAAAATCTTTCTTCTCTCACTCCCTTCCGCTTATCTCTCACAAACCCTAGAATTTCACATTCACCACTCTGCCATGCTTCCCCTATCTCTCACCGTCTCCACTCAGGTCCGGTACCTGCTTCGGAACTTGAACGAATCGAACTCCGGCAGTGTTCTTCAAGAGCTCCGTCAGATACATCTTGGGAAAGACCGAATTTCACTACTGTGTTCTGTGAGTCGCTAAGAAGTACAGCAGTTAGTGGAGATTTTCCAGAGAATCTATGCAATGCATTACAATTGTCTGTATCTGAGAAATTTGGAATTGGTTTTGCTCTATCGAATTCAGAAAATCTTGACATCAGAATGTGTGGGAAGAACTTCTGCACGGCTCAGATCAAGGAGTTGTGTGACAGCCATCTGTCTGTGGATTCAACTGAGCAAATTCAGAACATACTTATGTTTCTTAGGCAATCTGACGGCCTTTCCAAGCATGTGGATTCCTTTATCCGTCTGTTACCTAAAGTGCAGTTGAAGGAAGATACTGAATTTATTTTGGCTCCGTTGCTTTCAAATGAACTGCGTGAGGCAAACTTCTTGAGGAATTTGGAAAGCAATGAAGATGAGTTTAATACTCTTCTGGCTGAAATGGAGAAAGAAATTAGTATAGCTGATGTAATGAGAGAAATGGGTTATCGGTGCACAGTGAATGACTCACAGTGCAAAGATATGTTATCTCTTTTCTTACCACTGACCGAAAGTACCGTTGCCAGGATACTTGGAACAGTTGCCTGCACCCATGCGGATCTTGATGACAACCAGAACTCGTTCTTGACATTCTGTTCTGCTCTTGGTACCAGCAGTTTGTCTGATCTGCCATCTACGAACTCCTGGAACATTGATGTTCTCGTAGATTCAATCAAACAGCTTGCTCCTGGAATCAGCTGGATCAATGTTATTGAGAACCTTGATCAAGAGGGATTCTACATAACTAATGAGGCGGCATTTTGTTTACTCATGTCCATGTACAAACAAGCATGCCAGGATCCATTTCCACTAGGTGCCATTTGTGGGTCTGTTTGGAAGAATGCCGAGGGGCAACTATCTTTTCTCAAGTATGCCATCTCGGTACCCCCTGAAGTATTTACGTTTGCACATTCTGGGAGGCAACTGGCATATGCTGATGCTGCGAATGGTCATAAGTTTCAGTCCGGATATGCAAACCATGCATGGTTGTGTCTTGACCTTCTAGAAGTGTTGTGCCAGCTAGCTGAGAGAGGCCATGCAAGTTCTGTTCGACCAATGCTCGACTATCCTCTTAAGCATTGCCCAGAACTCCTGCTTCTTGGGATGGCCCACATCAATACTGCATTTAATCTCCTTCCCTACAAAGTAGCTTCTGCTGTTTTCTTAGTGGTACTTGAAAGTGCAGCGGGAAATCGTATGGCTCTTCATATTTGGAATGTTAACCCTAACATTCTGTTGAGGGGATTCATTGATACTCTCAAAACGGATCCGGACCATATGATTAAAGTGCTGGATTTGTGCCAGGAGCTAAAGATTCTGTCACCAGCATTGGATTTGCTTCCTTCTTCTTTCGGTATTAGACTGGCAGTCCTTGCTTCTAAAAAAGAACTCGTAGACCTGGAGAAGTGGCTTACTACTAATTTAAGTACCTATAAAGAGATTTTCTTTGAGGAGTGTCTCAAGTTCCTAAAAGTGGTTCAATTTGGCTCCCCTGTTGCTCTTGTGAATCTTTGTTCTGAGACAACTTCCATCTTCTTGAAGGCCCTTAAAGCTCATACGGGCTTGGTTTCCTCTAGCCGGCTTTCTGAGGAACTTGAAAAGTTGAATGAAATATTTTTGCATGCTAGTTCAAGAATGAAGACAGGTGATGGTACTGATGCATCAACTGCAAAAGACATTGAGGCAGAGGTCAACTCTCACTTCCAGCAACTGTTTTCTGGTCAGCTGACAGTTGATGCGATGATTCGATTGCTTGCTCGATTCAAGGAATCTTCTGAAAAAAGGGAAAAATCAATTTTTGAGTGCATGATTGCCAACTTGTTTGAGGAATACAATTTCTTCTCCAAGTACCCTGAAAGGCAGCTGAAAATTGCTGCAGTTCTCTTTGGATTACTTATTAAGTATCAACTTGTTACACACATCACACTTGGCATTGCCTTGCGAGCTGTTTTGGATGCATTGCGTAAACCTGCAGATTCTAAAATGTTTGTCTTTGGGATCACGGCTCTAGAACAGTTTTTAGACCGCATGATTGAGTGGCCACAGTACTGCAATCATATCTTACAAATATCTCATCTACGTGGCACACATACGGAGCTTGTTGCATTCATTGAACGGGCACTTGCCAGAATTTCATCAGGCCATGTGGAACCAGATGTAGGCCTTACTCCTCCTGCTGATCAGCTCCATGCTTCTCTCTCTTCGGCAAATCTGGAGATGCCGGTTTCGTTATTCCCGTCAATTGGATCTAGCAGTGCAATTCCAGGGACTCAAGTTTCTTCTTCACTCCAGCTGCAACAGAAGCACCATAATTCTTTGGAGGAGAGGCAAAAAGCCTCTGCTGCATTGCCAAGCTACATGAAGCCGGTTTTATCTCCTGTTGCACAACCTCCAGTTGTTCCCCCAGCTGATGCTGCCAGTATTCAGAAATCACAAAGTGCAGTTGGTGCCTCAGCTACGTTGGTTTCTTCTCCCGGTTTTATTCGCTCATCCCGATCAATTCCCTCAGCAAAATTTGGCTCTGCTATGAATATTGAAACACTTGTTGCTGCTGCTGAGAAAAGAGAAACTCCTATAGAGGCCCCAGCACCAGAAATTCAGGACAAGATAATGTTTATTATGAATAACTTATCTGCTACCAATGTTGAAGCTAAGTCAAAGGAATTGGCTGAGTTTTTGAAAGAGCAGTACTATCCTTGGTTTGCACAGTATCTGGTGATGAAAAGAGCAAGCATTGAGCATAATCATCATGACATGTACTTGAAGTTCCTAGACAAAATCAATTTAAAACCTCTGTACAGGGAGGTTGTTCAGGCCACTTACGAAAATTGCAAGGTTCTTTTAGGATCTGAACTCATAAAGTCAAGTTCAGAAGAACGTTCATTGCTGAAACATCTGGGAAGTTGGCTTGGGAAGATTACGATTGGTCGGAATCAAGTTTTACGGGCACGAGAGATCGATCCTAAATCCTTGATCGTAGAGGCTTATGAGAAAGGTTTAATGATTGCTGTTGTTCCATTTACCTCCAAGGTGGGTTATTCTACTGACAAATGCTTATTCACTGAACATGGATTCTTGGTATTCATACCGTATTACTTGCTGCAGATTTTGGATGCATGTCAAGTCAGTGTAGCATATCGACCTCCTAATCCTTGGACCATGGGTGTTCTTGGATTGCTCGTTGAGATTTATTCAATGCCAAACTTGAAAATGAACTTAAAATTTGAGATCGAGATGCTATTAAAGAACTTATGTGTGGATATGAAGGATGTCACTCCAACTTCCCTTCTCAAAGATAGGGTTAGGGAAATTGAAGGAAATCCTGATTTTTCCAGCAAAGATTTTGGATCATCTGAACCTCAGTCAGTTGGTGAAGTTAAATCTAGTACAGTATCTGCAGTAAATCAACCTGAGCTACAGCCTGACTCTGCGGGTCCCTCTCATCCTAGTGGTCCTTCACGAATATTGTCTCAGGATGAGAAGCTGGCAGCTTTAGGATTATCTTGTCCACTTCCTGCAGCTCATGGACTTCAACAGGCGCAACTACCATTTTCTATTGGGCAGCTTCCTGCATCAACATCTAATATTGAACAGCAAGTTATGATCAACCCAAAGATCCATGCTTTAGGTCTACAATTGCATTTTCAGAGTGTGCTTCCACTTGCAATAGATAGGGCTACCAAAGAGATAGTGTCTAGTATTGTACAGCGCAGTGTTTCTATAGCAACTCAAACAACCAAGGAACTTGTCTTGAAGGACTACGCCATGGAGTCAGACGAGACCCGAATACGTAATGCAGCTCGCTTGATGGTTGCTAGTTTGGCCGGTAGTCTTGCTCATGTGACATGCAAGGAACCTCTTCGTGGTTCAATTTCAAGCCAGCTGAGGAGTTCACTTCAAGGTTTGAACATTTCAAGCGATCTTCTTGAACATGCTGTACAGCTTGTTACGAATGATAACCTTGATCTGGGGTGTGCACTAATTGAGCAAGCTGCAACGGAGAAGGTTAGGCTGCTTATTTTGTTGAATAGATTTCTCTACCGTATTCATACAGCGTATGCTCTTCGGTGCGAAAGCCAGAACTTATATATAAAACTTAATTTGGAGTAA
Network for GWHGAAZE025032
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF16418.6
CNOT1_HEAT
528
642
3.30E-24
PF16417.6
CNOT1_TTP_bind
673
835
2.50E-65
PF16415.6
CNOT1_CAF1_bind
984
1136
3.30E-57
PF16415.6
CNOT1_CAF1_bind
1154
1228
1.10E-22
PF12842.8
DUF3819
1339
1461
5.30E-43
Protein Sequence
>GWHPAAZE025050 MELMPDAHTNKFTGVELHAPTNSLSCQINTPYNVTTLHHSLRFSLHTTITPKNLSSLTPFRLSLTNPRISHSPLCHASPISHRLHSGPVPASELERIELRQCSSRAPSDTSWERPNFTTVFCESLRSTAVSGDFPENLCNALQLSVSEKFGIGFALSNSENLDIRMCGKNFCTAQIKELCDSHLSVDSTEQIQNILMFLRQSDGLSKHVDSFIRLLPKVQLKEDTEFILAPLLSNELREANFLRNLESNEDEFNTLLAEMEKEISIADVMREMGYRCTVNDSQCKDMLSLFLPLTESTVARILGTVACTHADLDDNQNSFLTFCSALGTSSLSDLPSTNSWNIDVLVDSIKQLAPGISWINVIENLDQEGFYITNEAAFCLLMSMYKQACQDPFPLGAICGSVWKNAEGQLSFLKYAISVPPEVFTFAHSGRQLAYADAANGHKFQSGYANHAWLCLDLLEVLCQLAERGHASSVRPMLDYPLKHCPELLLLGMAHINTAFNLLPYKVASAVFLVVLESAAGNRMALHIWNVNPNILLRGFIDTLKTDPDHMIKVLDLCQELKILSPALDLLPSSFGIRLAVLASKKELVDLEKWLTTNLSTYKEIFFEECLKFLKVVQFGSPVALVNLCSETTSIFLKALKAHTGLVSSSRLSEELEKLNEIFLHASSRMKTGDGTDASTAKDIEAEVNSHFQQLFSGQLTVDAMIRLLARFKESSEKREKSIFECMIANLFEEYNFFSKYPERQLKIAAVLFGLLIKYQLVTHITLGIALRAVLDALRKPADSKMFVFGITALEQFLDRMIEWPQYCNHILQISHLRGTHTELVAFIERALARISSGHVEPDVGLTPPADQLHASLSSANLEMPVSLFPSIGSSSAIPGTQVSSSLQLQQKHHNSLEERQKASAALPSYMKPVLSPVAQPPVVPPADAASIQKSQSAVGASATLVSSPGFIRSSRSIPSAKFGSAMNIETLVAAAEKRETPIEAPAPEIQDKIMFIMNNLSATNVEAKSKELAEFLKEQYYPWFAQYLVMKRASIEHNHHDMYLKFLDKINLKPLYREVVQATYENCKVLLGSELIKSSSEERSLLKHLGSWLGKITIGRNQVLRAREIDPKSLIVEAYEKGLMIAVVPFTSKVGYSTDKCLFTEHGFLVFIPYYLLQILDACQVSVAYRPPNPWTMGVLGLLVEIYSMPNLKMNLKFEIEMLLKNLCVDMKDVTPTSLLKDRVREIEGNPDFSSKDFGSSEPQSVGEVKSSTVSAVNQPELQPDSAGPSHPSGPSRILSQDEKLAALGLSCPLPAAHGLQQAQLPFSIGQLPASTSNIEQQVMINPKIHALGLQLHFQSVLPLAIDRATKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRIRNAARLMVASLAGSLAHVTCKEPLRGSISSQLRSSLQGLNISSDLLEHAVQLVTNDNLDLGCALIEQAATEKVRLLILLNRFLYRIHTAYALRCESQNLYIKLNLE
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K12604
CNOT1, NOT1
RNA degradation
map03018
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
6.923
SRR3591706
second leaf
2.344
SRR3591707
mature leaf
2.053
SRR3591708
Shoot apex
3.286
SRR3591709
Stem
4.834
SRR3591710
White floral bud
6.404
SRR3591711
White flower
6.193
SRR3591712
Green floral bud
5.074
SRR3591713
Yellow flower
2.202
SRP173429
SRR8316895
Juvenile bud stage
5.343
SRR8316896
Juvenile bud stage
6.732
SRR8316897
Juvenile bud stage
2.984
SRR8316894
Third green stage
3.691
SRR8316900
Third green stage
6.454
SRR8316901
Third green stage
5.473
SRR8316898
Complete white stage
1.426
SRR8316899
Complete white stage
4.064
SRR8316903
Complete white stage
5.610
SRR8316902
Silver flowering stage
1.419
SRR8316904
Silver flowering stage
3.614
SRR8316905
Silver flowering stage
1.286
SRR8316906
Gold flowering stage
2.000
SRR8316907
Gold flowering stage
2.770
SRR8316908
Gold flowering stage
1.986
SRP132670
SRR6706286
Control
5.106
SRR6706287
Light intensity 50%
6.288
SRR6706288
Light intensity 20%
7.329
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
1.811
CNS0095593
Slightly white alabastrum(diploid) 2
1.284
CNS0095594
Slightly white alabastrum(diploid) 3
1.815
CNS0095595
Whole white alabastrum(diploid) 2
1.502
CNS0095596
Whole white alabastrum(diploid) 3
1.033
CNS0095597
Whole white alabastrum(diploid) 4
1.241
CNS0095598
Silvery flower (diploied) 1
3.509
CNS0095599
Silvery flower (diploied) 2
2.276
CNS0095600
Silvery flower (diploied) 3
6.363
CNS0095601
Golden flower (diploid) 1
2.524
CNS0095602
Golden flower (diploid) 2
6.262
CNS0095603
Golden flower (diploid) 3
6.568
CNS0095604
Slightly white alabastrum(tetraploid) 1
2.071
CNS0095605
Slightly white alabastrum(tetraploid) 2
0.951
CNS0095606
Slightly white alabastrum(tetraploid) 3
6.688
CNS0095607
Whole white alabastrum(tetraploid) 1
1.158
CNS0095608
Whole white alabastrum(tetraploid) 2
1.149
CNS0095609
Whole white alabastrum(tetraploid) 3
3.919
CNS0095610
Silvery flower (diploied) 1
4.360
CNS0095611
Silvery flower (diploied) 2
6.223
CNS0095612
Silvery flower (diploied) 3
3.469
CNS0095613
Golden flower (tetraploid) 1
0.897
CNS0095614
Golden flower (tetraploid) 2
2.233
CNS0095615
Golden flower (tetraploid) 3
3.384
CRA001975
CRR073297
Stem 1
5.208
CRR073298
Stem 2
4.489
CRR073299
Stem 3
2.459
CRR073300
Leaf 1
5.088
CRR073301
Leaf 2
4.048
CRR073302
Leaf 3
2.153
CRR073303
Juvenile bud 1
2.067
CRR073304
Juvenile bud 2
1.056
CRR073305
Juvenile bud 3
4.474
CRR073306
Third green 1
1.345
CRR073307
Third green 2
0.665
CRR073308
Third green 3
1.419
CRR073309
Second white 1
0.548
CRR073310
Second white 2
0.460
CRR073311
Second white 3
1.168
CRR073312
Silver flowering 1
0.264
CRR073313
Silver flowering 2
0.718
CRR073314
Silver flowering 3
0.332
CRR073315
Gold flowering 1
0.312
CRR073316
Gold flowering 2
0.514
CRR073317
Gold flowering 3
0.625
CRR073318
Tawny withering 1
1.652
CRR073319
Tawny withering 2
1.057
CRR073320
Tawny withering 3
1.404