Gene detail

Detail information of GWHGAAZE025113

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP37790.1	1.9912E-149	hypothetical protein JCGZ_06692 [Jatropha curcas]
COG	YP_007144141.1	2E-111	ribose-phosphate pyrophosphokinase
Swissprot	tr\|Q9XG98\|KPRS1_SPIOL	2E-146	Ribose-phosphate pyrophosphokinase 1
trEMBL	tr\|A0A067KZX4\|A0A067KZX4_JATCU	7E-150	Uncharacterized protein {ECO:0000313\|EMBL:KDP37790.1}
TAIR10	AT2G35390.1	3E-111	Phosphoribosyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	55399579	55406013	-
GWHAAZE00000007	mRNA	55399579	55406013	-
GWHAAZE00000007	exon	55399579	55399767	-
GWHAAZE00000007	exon	55401845	55401988	-
GWHAAZE00000007	exon	55404448	55404696	-
GWHAAZE00000007	exon	55405852	55406013	-
GWHAAZE00000007	CDS	55405852	55406013	-
GWHAAZE00000007	CDS	55404448	55404696	-
GWHAAZE00000007	CDS	55401845	55401988	-
GWHAAZE00000007	CDS	55399579	55399767	-

Transcript Sequence
>GWHTAAZE025147 ATGGTAGATCAGTTGAAGTTTAAGGACAATGGTAAGCCTCTCGTGCCAACCCTCAGCAGGGAACAAACAACATTGCCTAGCTTTTTGGTAGCGAATTCAAGTCCCAAAACCGAAAGCAGGCTCCGAATATTTTCTGGGACAGCAAACCCTGCACTTTCTCAGGAAATTGCTTGCTACATGGGTCTGGAACTTGGAAAAATTAAGATAAAACGTTTTGCAGATGGGGAGATTTACGTTCAGTTGCAAGAGAGTGTTAGAGGGTGTGATGTGTACCTTGTGCAACCTACATGTCCTCCTGCAAATGAGAACCTTATGGAGCTTTTGATAATGATAGATGCTTGTCGAAGAGCTTCGGCCAAAACAATTACTGCAGTGATCCCGTATTTTGGATATGCCAGAGCTGATCGAAAGACTCAAGGCCGTGAATCTATTGCTGCCAAGCTGGTAGCCAACCTGATAACAGAAGCAGGTGCACACCGTGTTCTTGCTTGTGATCTTCATTCTGGGCAGTCCATGGGTTATTTTGATATTCCAGTCGATCATGTACATGGTCAGCCGGTGATACTTGATTACCTGGCCAGCAAAACCATATGTTCAGATGATTTGGTGGTAGTTTCACCAGATGTTGGTGGAGTTGCTAGGGCTAGATCTTTTGCCAAGAAATTGTCTGATGCACCTCTAGCCATTGTTGATAAACGACGCCAAGGACACAATGTTGCTGAAGTAAGTTCTATCAATGTATAA

Network for GWHGAAZE025113

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13793.7	Pribosyltran_N	41	157	3.70E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00948	PRPS, prsA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Pentose phosphate pathway	map00030
		Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0009165	biological_process	nucleotide biosynthetic process
GO:0009156	biological_process	ribonucleoside monophosphate biosynthetic process
GO:0044249	biological_process	cellular biosynthetic process
GO:0009116	biological_process	nucleoside metabolic process
GO:0000287	molecular_function	magnesium ion binding
GO:0004749	molecular_function	ribose phosphate diphosphokinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.464
	SRR3591706	second leaf	45.481
	SRR3591707	mature leaf	43.599
	SRR3591708	Shoot apex	54.083
	SRR3591709	Stem	22.544
	SRR3591710	White floral bud	41.929
	SRR3591711	White flower	40.113
	SRR3591712	Green floral bud	45.841
	SRR3591713	Yellow flower	46.669
SRP173429	SRR8316895	Juvenile bud stage	30.302
	SRR8316896	Juvenile bud stage	43.504
	SRR8316897	Juvenile bud stage	21.959
	SRR8316894	Third green stage	19.641
	SRR8316900	Third green stage	53.195
	SRR8316901	Third green stage	47.532
	SRR8316898	Complete white stage	22.090
	SRR8316899	Complete white stage	59.667
	SRR8316903	Complete white stage	38.188
	SRR8316902	Silver flowering stage	20.232
	SRR8316904	Silver flowering stage	32.637
	SRR8316905	Silver flowering stage	14.641
	SRR8316906	Gold flowering stage	54.270
	SRR8316907	Gold flowering stage	52.999
	SRR8316908	Gold flowering stage	52.014
SRP132670	SRR6706286	Control	41.474
	SRR6706287	Light intensity 50%	44.903
	SRR6706288	Light intensity 20%	50.408
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.540
	CNS0095593	Slightly white alabastrum(diploid) 2	27.745
	CNS0095594	Slightly white alabastrum(diploid) 3	18.312
	CNS0095595	Whole white alabastrum(diploid) 2	20.351
	CNS0095596	Whole white alabastrum(diploid) 3	21.219
	CNS0095597	Whole white alabastrum(diploid) 4	18.575
	CNS0095598	Silvery flower (diploied) 1	28.952
	CNS0095599	Silvery flower (diploied) 2	22.566
	CNS0095600	Silvery flower (diploied) 3	30.684
	CNS0095601	Golden flower (diploid) 1	20.966
	CNS0095602	Golden flower (diploid) 2	29.307
	CNS0095603	Golden flower (diploid) 3	25.313
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.851
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.331
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.075
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.629
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.598
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.362
	CNS0095610	Silvery flower (diploied) 1	40.083
	CNS0095611	Silvery flower (diploied) 2	38.516
	CNS0095612	Silvery flower (diploied) 3	44.479
	CNS0095613	Golden flower (tetraploid) 1	18.227
	CNS0095614	Golden flower (tetraploid) 2	29.752
	CNS0095615	Golden flower (tetraploid) 3	23.107
CRA001975	CRR073297	Stem 1	53.389
	CRR073298	Stem 2	43.965
	CRR073299	Stem 3	51.879
	CRR073300	Leaf 1	49.209
	CRR073301	Leaf 2	49.658
	CRR073302	Leaf 3	56.226
	CRR073303	Juvenile bud 1	37.629
	CRR073304	Juvenile bud 2	40.634
	CRR073305	Juvenile bud 3	35.133
	CRR073306	Third green 1	14.495
	CRR073307	Third green 2	9.592
	CRR073308	Third green 3	15.419
	CRR073309	Second white 1	17.155
	CRR073310	Second white 2	19.100
	CRR073311	Second white 3	23.655
	CRR073312	Silver flowering 1	13.517
	CRR073313	Silver flowering 2	11.934
	CRR073314	Silver flowering 3	7.884
	CRR073315	Gold flowering 1	47.707
	CRR073316	Gold flowering 2	70.615
	CRR073317	Gold flowering 3	37.356
	CRR073318	Tawny withering 1	28.583
	CRR073319	Tawny withering 2	29.400
	CRR073320	Tawny withering 3	25.816