Gene detail

Detail information of GWHGAAZE025140

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN78656.1	3.5684E-110	hypothetical protein VITISV_006850 [Vitis vinifera]
COG	YP_007096787.1	1E-19	glutathione S-transferase
Swissprot	tr\|Q9FQA3\|GST23_MAIZE	1E-68	Glutathione transferase GST 23
trEMBL	tr\|A5B510\|A5B510_VITVI	1E-110	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN78656.1}
TAIR10	AT2G29420.1	6E-41	glutathione S-transferase tau 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	55921776	55923361	+
GWHAAZE00000007	mRNA	55921776	55923361	+
GWHAAZE00000007	exon	55921776	55922103	+
GWHAAZE00000007	exon	55922945	55923361	+
GWHAAZE00000007	five_prime_UTR	55921776	55921791	+
GWHAAZE00000007	CDS	55921792	55922103	+
GWHAAZE00000007	CDS	55922945	55923298	+
GWHAAZE00000007	three_prime_UTR	55923299	55923361	+

Transcript Sequence
>GWHTAAZE025174 TAGAAATCAAAAAAACATGGCAGAAGAAGTGAAGCTTATAAGGACATGGTCAAGTCCATTTGCTTTGAGGATTGTTTGGGCACTGAAGCTTAAAGGGATAGAATTCGAAACTGTATTAGAAGATCTAGCGAGCAAGAGTCCGTTGCTGCTCCAGTCTAATCCGGTTCACAAAAAGGTCCCCGTGCTTGTTCATAATGGAAAACCAGTATCTGAATCACTTGTAATTCTTGAGTATATTGAAGAGACATGGAAGGAAAAACCCTTGCTACCCGAAGATCCTTATGAGAAAGCCAGTGCACGTTTCTGGGCCAAATTCAGCGACGAGAAGCTTTTGCCATCAGTATGGACAGTTTTCATCAGTCAAGGGAATAAGCAAGAAGAAGCCCTTGTTCCAGCCCTGGAAAACTTGCAATTCATTGAAGAGCAACTAGAAGGAAAGAAATTCTTCGGGGGAGAAAAAATTGGGTTACTTGATCTTGCAATCGGGTGGATGGCCGATATGGTCACTGTCTTAGAAGAGGTTACTGGCCTCAAATTGATCCAAGAAGATAAATTCCCCTTGTTGTCGGCTTGGATTGAGATTTTTGCCGATGTTCCGGAGGTCAAAGAAAGTGGCGCACCCCGAGAGAAGCTAATCTCCAAGTTCCAAGCCATTCGTGATTCATATGCTGCAACCAAATGAACCAGTGGCAGTTTGTGAAAGTCAATAAAAATCGCGTGTGAATAAAGATCCAATCATCAGCTT

Network for GWHGAAZE025140

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02798.21	GST_N	5	75	1.50E-18
PF00043.26	GST_C	112	190	4.50E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00799	GST, gst	Metabolic pathways	map01100
		Glutathione metabolism	map00480
		Metabolism of xenobiotics by cytochrome P450	map00980
		Drug metabolism - cytochrome P450	map00982
		Drug metabolism - other enzymes	map00983
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.051
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	1.050
	SRR3591710	White floral bud	14.401
	SRR3591711	White flower	17.250
	SRR3591712	Green floral bud	0.518
	SRR3591713	Yellow flower	1.473
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.189
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	1.682
	SRR8316898	Complete white stage	24.338
	SRR8316899	Complete white stage	15.162
	SRR8316903	Complete white stage	38.667
	SRR8316902	Silver flowering stage	23.335
	SRR8316904	Silver flowering stage	29.264
	SRR8316905	Silver flowering stage	12.416
	SRR8316906	Gold flowering stage	23.302
	SRR8316907	Gold flowering stage	59.413
	SRR8316908	Gold flowering stage	50.968
SRP132670	SRR6706286	Control	0.857
	SRR6706287	Light intensity 50%	1.184
	SRR6706288	Light intensity 20%	0.734
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.676
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.839
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.633
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	76.157
	CNS0095599	Silvery flower (diploied) 2	104.697
	CNS0095600	Silvery flower (diploied) 3	55.269
	CNS0095601	Golden flower (diploid) 1	3.362
	CNS0095602	Golden flower (diploid) 2	9.226
	CNS0095603	Golden flower (diploid) 3	9.540
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.382
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.466
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.426
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.241
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.763
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	194.792
	CNS0095611	Silvery flower (diploied) 2	156.397
	CNS0095612	Silvery flower (diploied) 3	64.943
	CNS0095613	Golden flower (tetraploid) 1	3.314
	CNS0095614	Golden flower (tetraploid) 2	36.928
	CNS0095615	Golden flower (tetraploid) 3	1.519
CRA001975	CRR073297	Stem 1	0.179
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.055
	CRR073300	Leaf 1	0.472
	CRR073301	Leaf 2	0.426
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	1.396
	CRR073304	Juvenile bud 2	2.903
	CRR073305	Juvenile bud 3	2.990
	CRR073306	Third green 1	6.626
	CRR073307	Third green 2	20.611
	CRR073308	Third green 3	26.245
	CRR073309	Second white 1	2.913
	CRR073310	Second white 2	4.246
	CRR073311	Second white 3	1.484
	CRR073312	Silver flowering 1	0.190
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.539
	CRR073317	Gold flowering 3	0.352
	CRR073318	Tawny withering 1	0.391
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.966