Gene detail

Detail information of GWHGAAZE025228

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271029.1	0	PREDICTED: probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Vitis vinifera]
COG	YP_003834475.1	6E-14	NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein
Swissprot	tr\|Q8S0G4\|GPDH1_ORYSJ	0	Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic
trEMBL	tr\|D7TDP0\|D7TDP0_VITVI	0	Glycerol-3-phosphate dehydrogenase [NAD(+)] {ECO:0000256\|RuleBase:RU361243}
TAIR10	AT2G41540.3	0	6-phosphogluconate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	57743545	57747110	-
GWHAAZE00000007	mRNA	57743545	57747110	-
GWHAAZE00000007	exon	57743545	57743568	-
GWHAAZE00000007	exon	57743694	57743941	-
GWHAAZE00000007	exon	57745295	57745516	-
GWHAAZE00000007	exon	57746459	57747110	-
GWHAAZE00000007	CDS	57746459	57747110	-
GWHAAZE00000007	CDS	57745295	57745516	-
GWHAAZE00000007	CDS	57743694	57743941	-
GWHAAZE00000007	CDS	57743545	57743568	-

Transcript Sequence
>GWHTAAZE025262 ATGGTTGGAACTAGTGAGGAGGGGGTTTACTCAAACGGGTCCACCCAGAACTCAAATGGGTCTGTAGAGGAGAAGGTGGATGATCTTCGTCGCCTTTTAGGTAAAACAGAAGGCGACCCATTGAGGATAGTTGGTGTTGGAGCTGGTGCGTGGGGTAGTGTTTTTTTGGCAATGTTACAAGACGGGTATGGTCACCTTCGAGAGAAGGTCCAAATACGGATATGGAGAAGACCCGGTAGGTCGGTTGATAGATCCACGGCCGAGCACCTCTTTGAGGTGATAAATTCGAGGGAAGATGTGTTGAGGAGATTAATAAGGAGATGTGCGTATTTGAAGTATGTGGAAGCAAGATTAGGTGATAGGATTCTACATGCTGATGAAATCTTGAAAGATGGGTTTTGTTTGAATATGATTGACACTCCGCTTTGTCCGTTGAAAGTTGTGACCAATTTGCAGGAGGCTGTGTGGGATGCTGATATTGTGGTTAATGGGTTGCCGTCAACGGAAACACGACAAGTTTTTGAAGAAATTAGTCCGTATTGGAAGGAGAGAATTACAGCGCCCGTTATAATTTCTTTGGCAAAGGGTATAGAAGCAGAATTGGAGCCAGAACCCCGAATTATAACTCCTACACAGATGATCAATCGAGCAACTGGAGTTCCTATGGAGAACATTCTATACCTTGGAGGACCTAATATTGCATCCGAGATTTACAACAGAGAGTATGCAAATGCTAGGATATGTGGAGCCGAAAAGTGGAGGAAACCATTGGCAAAGTTTTTGAGGCAACCCCATTTTATTGTGTGGGATAATAGTGATCTTGTCACTCACGAAGTTATGGGTGGCTTAAAGAATGTCTATGCTATTGGAGCTGGTATGATTGCAGCTCTAACAAACGAGAGTGCCACCAGCAAATCCGTATACTTTGCACACTGTACATCAGAGATGATATTTATCACTCATCTTTTGGCCGAAGAACCAGAGAAGCTTGCAGGTCCCCTGTTGGCTGATACATATGTAACGTTGTTGAAAGGTCGTAATGCATGGTATGGCCAGAAGTTGGCTAAAGGAGAGCTGAGCCTTGATATGGGCGATAGCATTAAGGGGAAGGGGATGATTCAGGATTCTCTCTCTTATAGGATTTAG

Network for GWHGAAZE025228

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01210.24	NAD_Gly3P_dh_N	145	247	5.00E-11
PF07479.15	NAD_Gly3P_dh_C	273	362	3.10E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00006	GPD1	Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		MAPK signaling pathway - yeast	map04011

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0006072	biological_process	glycerol-3-phosphate metabolic process
GO:0046168	biological_process	glycerol-3-phosphate catabolic process
GO:0009331	cellular_component	glycerol-3-phosphate dehydrogenase complex
GO:0004367	molecular_function	glycerol-3-phosphate dehydrogenase [NAD+] activity
GO:0016491	molecular_function	oxidoreductase activity
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287	molecular_function	NAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.339
	SRR3591706	second leaf	10.054
	SRR3591707	mature leaf	10.730
	SRR3591708	Shoot apex	11.155
	SRR3591709	Stem	17.986
	SRR3591710	White floral bud	23.030
	SRR3591711	White flower	30.541
	SRR3591712	Green floral bud	20.655
	SRR3591713	Yellow flower	37.673
SRP173429	SRR8316895	Juvenile bud stage	17.682
	SRR8316896	Juvenile bud stage	21.562
	SRR8316897	Juvenile bud stage	15.682
	SRR8316894	Third green stage	8.276
	SRR8316900	Third green stage	26.683
	SRR8316901	Third green stage	25.335
	SRR8316898	Complete white stage	9.552
	SRR8316899	Complete white stage	33.719
	SRR8316903	Complete white stage	17.211
	SRR8316902	Silver flowering stage	15.449
	SRR8316904	Silver flowering stage	19.199
	SRR8316905	Silver flowering stage	9.546
	SRR8316906	Gold flowering stage	43.315
	SRR8316907	Gold flowering stage	35.987
	SRR8316908	Gold flowering stage	44.851
SRP132670	SRR6706286	Control	26.487
	SRR6706287	Light intensity 50%	26.761
	SRR6706288	Light intensity 20%	29.960
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.992
	CNS0095593	Slightly white alabastrum(diploid) 2	18.860
	CNS0095594	Slightly white alabastrum(diploid) 3	15.384
	CNS0095595	Whole white alabastrum(diploid) 2	18.950
	CNS0095596	Whole white alabastrum(diploid) 3	11.610
	CNS0095597	Whole white alabastrum(diploid) 4	13.447
	CNS0095598	Silvery flower (diploied) 1	14.399
	CNS0095599	Silvery flower (diploied) 2	15.241
	CNS0095600	Silvery flower (diploied) 3	26.189
	CNS0095601	Golden flower (diploid) 1	15.882
	CNS0095602	Golden flower (diploid) 2	23.909
	CNS0095603	Golden flower (diploid) 3	23.589
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.611
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.678
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.107
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.284
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.913
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.687
	CNS0095610	Silvery flower (diploied) 1	31.402
	CNS0095611	Silvery flower (diploied) 2	27.112
	CNS0095612	Silvery flower (diploied) 3	22.585
	CNS0095613	Golden flower (tetraploid) 1	21.630
	CNS0095614	Golden flower (tetraploid) 2	28.565
	CNS0095615	Golden flower (tetraploid) 3	24.107
CRA001975	CRR073297	Stem 1	17.396
	CRR073298	Stem 2	15.886
	CRR073299	Stem 3	14.822
	CRR073300	Leaf 1	24.792
	CRR073301	Leaf 2	21.211
	CRR073302	Leaf 3	21.568
	CRR073303	Juvenile bud 1	23.704
	CRR073304	Juvenile bud 2	21.299
	CRR073305	Juvenile bud 3	24.294
	CRR073306	Third green 1	14.258
	CRR073307	Third green 2	13.972
	CRR073308	Third green 3	13.006
	CRR073309	Second white 1	14.855
	CRR073310	Second white 2	24.723
	CRR073311	Second white 3	18.204
	CRR073312	Silver flowering 1	20.455
	CRR073313	Silver flowering 2	15.926
	CRR073314	Silver flowering 3	26.382
	CRR073315	Gold flowering 1	13.906
	CRR073316	Gold flowering 2	19.920
	CRR073317	Gold flowering 3	8.718
	CRR073318	Tawny withering 1	17.513
	CRR073319	Tawny withering 2	16.249
	CRR073320	Tawny withering 3	24.277