Gene detail

Detail information of GWHGAAZE025233

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008231566.1	0	PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Prunus mume]
Swissprot	tr\|Q9FPS3\|UBP24_ARATH	1E-179	Ubiquitin carboxyl-terminal hydrolase 24
trEMBL	tr\|A0A061FJS7\|A0A061FJS7_THECC	0	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR10	AT4G30890.3	2E-142	ubiquitin-specific protease 24

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	57842895	57850546	+
GWHAAZE00000007	mRNA	57842895	57850546	+
GWHAAZE00000007	exon	57842895	57842924	+
GWHAAZE00000007	exon	57843688	57844404	+
GWHAAZE00000007	exon	57844786	57844973	+
GWHAAZE00000007	exon	57846005	57846252	+
GWHAAZE00000007	exon	57847010	57847155	+
GWHAAZE00000007	exon	57848229	57848405	+
GWHAAZE00000007	exon	57850358	57850546	+
GWHAAZE00000007	CDS	57842895	57842924	+
GWHAAZE00000007	CDS	57843688	57844404	+
GWHAAZE00000007	CDS	57844786	57844973	+
GWHAAZE00000007	CDS	57846005	57846252	+
GWHAAZE00000007	CDS	57847010	57847155	+
GWHAAZE00000007	CDS	57848229	57848405	+
GWHAAZE00000007	CDS	57850358	57850546	+

Transcript Sequence
>GWHTAAZE025267 ATGTGTACGGTAAAGCTGGTCATTGAGAAGGTTTTTGTATTTGGGTCGTTTTCTGAAGATGAAACCAGGTCAATCCTCACTCAGTCGCCGAAAAGCGCTGAAAAGCCTGTGGAAAATAAAGTTTCACCAGTGGCTTCGTTGAATTCCCTGCCTGATTTGTCATTTGGTAGTTTTGACAGTGTATTCGGACAATTGGATTCTTCAAAGGGTACAACAGTTTCTCTGCCCTCTCATAAATTAGATTCATCAAAGGGGTCGTCAGTATCTCAGCCCTCTAAGATTCATAAGGACAGCAAATCCAACGGTGCAAAAACAGCCAATGATCACTTGCCTGGATCTTGTGGAATTTTAAAGGAAAATGGAGGCATTCTCCACCATCCCAAGCTCTCGCCTCTTAGTAATGGCAATACGGAACCGAAAACGATCGATGGAATTGGTTTAGCTCCTTTACATATATCTGAAAAGGAAATTGGTCCTTCAAAAGAATTCCCTAGTTTGAATAAAGAAAAGCTTGATGGTATCAAATCAAGTGAAGGAATTTTGAATGGGACTGTTAACGAACATTTTGAAAATAATACTCATAAGGCCTCTAACGGGCCTGCTGTAACAGTTGGAGGAGACTTGCTACCTCGAGGCTTAATCAACTCGGGGAATTTGTGCTTTCTCAATGCAACACTGCAGGCTCTTTTATCCTGTTCACAATTAGTTAAGCTCTTACAGGAACTAAGAATTCGTAGTGTCTCAAAGGTTGTCTATCCAACATTGGCTGCATTTGCTGAATTTGTCTCTAACTTTGAGATGCCCGTTGGTGCAAGCCCTAATAAGAAAGATACGACTGGTCTTGAAACTGGTAGGCCTTTCAGCCCTGCCATGTTTGAAGGAGTTTTGAGAAAGTTTACTCCTGATGTACCAAATAGCATCTCTGGCAGGCCAAGGCAAGAAGATGCACAAGAGTTTTTGAGTTTTATCATGCACCAAATGCATGATGAATTACTTAAGCTTGAAGGACAATCATTAAGTGGAAGTGGCATCAAATCATCAATTGTTTCTTCTGCTGAAGATGAAGAGTGGGAGACAGTTGGACCCAAGAATAAATCTGCAGTGACAAGAACACAAACTTTTGTTCCTTCAGAACTAAGTGCAATTTTTGGAGGACAATTGAGAAGTGTTGTGAAGGCAAGAGGAAACAAAGCCTCTGCTACTGTTCAACCATTTCTTTTGCTGCATCTTGATGTTTCCCATGAAACTGTTCGTACTATTGAGGATGCTCTACGCTTATTCTCTGCTCCAGAAACACTTGAGGAGTATCGTACATCAACAACCGTGAAGGCTGGAGTTGTGAGTGCAAGAAAATCAATAAACATACAGACACTTCCAAAGATAATGATACTTCACCTAATGAGGTTCGGCTATGGAAGCCATGGAAGCACAAAGTTGCACAAGCCTGTACGCTTTCCCCTTGAATTGGTTTTAAGTCGCGATTTGCTTGTTTCTCCAACTACTGAGGGACGGAGATATCAACTTGTTTCCACAATTACCCACCACGGAAAGGAAGCGTCAAAGGGGCATTATACTGCAGATGCTTGTTACCATGATGACCAGTGGCTGCGTTTTGATGATGCATCCGTCACTGCCGTTGGTACAAGTAAGGTGTTGCACGACCAAGCCTACGTACTCTTTTACAGACAACTATAA

Network for GWHGAAZE025233

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00443.30	UCH	211	561	3.40E-46

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
K11841	USP10, UBP3	Mitophagy - yeast	map04139

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0016579	biological_process	protein deubiquitination
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	49.449
	SRR3591706	second leaf	32.433
	SRR3591707	mature leaf	27.666
	SRR3591708	Shoot apex	36.033
	SRR3591709	Stem	41.907
	SRR3591710	White floral bud	44.501
	SRR3591711	White flower	58.483
	SRR3591712	Green floral bud	38.849
	SRR3591713	Yellow flower	50.895
SRP173429	SRR8316895	Juvenile bud stage	25.140
	SRR8316896	Juvenile bud stage	29.508
	SRR8316897	Juvenile bud stage	12.884
	SRR8316894	Third green stage	16.150
	SRR8316900	Third green stage	41.509
	SRR8316901	Third green stage	32.171
	SRR8316898	Complete white stage	17.919
	SRR8316899	Complete white stage	46.885
	SRR8316903	Complete white stage	35.668
	SRR8316902	Silver flowering stage	26.539
	SRR8316904	Silver flowering stage	37.598
	SRR8316905	Silver flowering stage	16.273
	SRR8316906	Gold flowering stage	51.445
	SRR8316907	Gold flowering stage	46.862
	SRR8316908	Gold flowering stage	52.103
SRP132670	SRR6706286	Control	30.752
	SRR6706287	Light intensity 50%	33.131
	SRR6706288	Light intensity 20%	36.142
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.997
	CNS0095593	Slightly white alabastrum(diploid) 2	20.893
	CNS0095594	Slightly white alabastrum(diploid) 3	21.123
	CNS0095595	Whole white alabastrum(diploid) 2	20.705
	CNS0095596	Whole white alabastrum(diploid) 3	21.094
	CNS0095597	Whole white alabastrum(diploid) 4	19.614
	CNS0095598	Silvery flower (diploied) 1	27.205
	CNS0095599	Silvery flower (diploied) 2	23.043
	CNS0095600	Silvery flower (diploied) 3	56.596
	CNS0095601	Golden flower (diploid) 1	23.167
	CNS0095602	Golden flower (diploid) 2	49.475
	CNS0095603	Golden flower (diploid) 3	49.544
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.795
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.336
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.382
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.305
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.819
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.927
	CNS0095610	Silvery flower (diploied) 1	43.915
	CNS0095611	Silvery flower (diploied) 2	43.373
	CNS0095612	Silvery flower (diploied) 3	51.566
	CNS0095613	Golden flower (tetraploid) 1	23.848
	CNS0095614	Golden flower (tetraploid) 2	38.369
	CNS0095615	Golden flower (tetraploid) 3	46.256
CRA001975	CRR073297	Stem 1	50.640
	CRR073298	Stem 2	38.887
	CRR073299	Stem 3	39.909
	CRR073300	Leaf 1	41.771
	CRR073301	Leaf 2	37.490
	CRR073302	Leaf 3	37.233
	CRR073303	Juvenile bud 1	42.687
	CRR073304	Juvenile bud 2	34.873
	CRR073305	Juvenile bud 3	50.825
	CRR073306	Third green 1	39.285
	CRR073307	Third green 2	35.446
	CRR073308	Third green 3	42.072
	CRR073309	Second white 1	43.170
	CRR073310	Second white 2	42.272
	CRR073311	Second white 3	48.801
	CRR073312	Silver flowering 1	41.424
	CRR073313	Silver flowering 2	41.350
	CRR073314	Silver flowering 3	32.276
	CRR073315	Gold flowering 1	24.112
	CRR073316	Gold flowering 2	38.183
	CRR073317	Gold flowering 3	26.503
	CRR073318	Tawny withering 1	40.730
	CRR073319	Tawny withering 2	35.011
	CRR073320	Tawny withering 3	42.796