Gene detail

Detail information of GWHGAAZE025244

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011078749.1	2.37092E-84	PREDICTED: signal peptidase complex subunit 3B-like [Sesamum indicum]
Swissprot	tr\|Q53YF3\|SPC3B_ARATH	6E-77	Signal peptidase complex subunit 3B
trEMBL	tr\|A0A022R9Y3\|A0A022R9Y3_ERYGU	2E-83	Uncharacterized protein {ECO:0000313\|EMBL:EYU37071.1}
TAIR10	AT5G27430.1	3E-61	Signal peptidase subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	58051113	58057640	+
GWHAAZE00000007	mRNA	58051113	58057640	+
GWHAAZE00000007	exon	58051113	58051157	+
GWHAAZE00000007	exon	58051318	58051391	+
GWHAAZE00000007	exon	58052308	58052365	+
GWHAAZE00000007	exon	58054690	58054752	+
GWHAAZE00000007	exon	58055216	58055269	+
GWHAAZE00000007	exon	58057108	58057194	+
GWHAAZE00000007	exon	58057515	58057640	+
GWHAAZE00000007	CDS	58051113	58051157	+
GWHAAZE00000007	CDS	58051318	58051391	+
GWHAAZE00000007	CDS	58052308	58052365	+
GWHAAZE00000007	CDS	58054690	58054752	+
GWHAAZE00000007	CDS	58055216	58055269	+
GWHAAZE00000007	CDS	58057108	58057194	+
GWHAAZE00000007	CDS	58057515	58057640	+

Transcript Sequence
>GWHTAAZE025278 ATGCATTCGTTTGGGTACAGAGCAAACGCTTTGCTAACATTCGCGGTTTTGAACATCAATTGGTTCCAGAAGAAACCAGATGGTGACGATGAGGTAATAATACTAATACACAAGCCCTTATCAGGGCTGAAACGGTTGACCAAATGGCTAGACCAGAAGGTTTCACATGAGAGGGCTGTCAGCATGACGTTGAATATATCAGCGAACCTACAGTCAGTGTTCACTTGGAATACAAAGCAGGTTTTTGTATTTCTAGCAGCTGAGTATGAGACCCCCACGAATTCCCTGAACCAGGTATCCCTGTGGGATGGTATTATACCTTCAAAAGAGCATGCTAAGTTCTGGATTCATACAACCAACAAGTACCGTTTCATCGATCAAGGAAGCAATCTTCGAGGTAAAGATTTTAACTTAACGTTGCACTGGCACGTGATGCCTAAGACCGGTAAGATGTTTGCGGATAAATTAGTTATGTCTGGTTTTCGCTTGCCCGAGGCATATAGATGA

Network for GWHGAAZE025244

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04573.13	SPC22	10	165	1.20E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12948	SPCS3, SPC3	Protein export	map03060

Gene Ontology

GO term	Ontology	Name
GO:0006465	biological_process	signal peptide processing
GO:0005787	cellular_component	signal peptidase complex
GO:0016021	cellular_component	integral component of membrane
GO:0008233	molecular_function	peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	63.036
	SRR3591706	second leaf	29.946
	SRR3591707	mature leaf	21.120
	SRR3591708	Shoot apex	74.043
	SRR3591709	Stem	35.481
	SRR3591710	White floral bud	41.824
	SRR3591711	White flower	36.059
	SRR3591712	Green floral bud	61.529
	SRR3591713	Yellow flower	29.283
SRP173429	SRR8316895	Juvenile bud stage	26.565
	SRR8316896	Juvenile bud stage	39.407
	SRR8316897	Juvenile bud stage	18.701
	SRR8316894	Third green stage	16.515
	SRR8316900	Third green stage	52.307
	SRR8316901	Third green stage	46.065
	SRR8316898	Complete white stage	14.640
	SRR8316899	Complete white stage	50.823
	SRR8316903	Complete white stage	25.658
	SRR8316902	Silver flowering stage	9.143
	SRR8316904	Silver flowering stage	15.901
	SRR8316905	Silver flowering stage	8.543
	SRR8316906	Gold flowering stage	19.845
	SRR8316907	Gold flowering stage	21.779
	SRR8316908	Gold flowering stage	25.410
SRP132670	SRR6706286	Control	49.854
	SRR6706287	Light intensity 50%	48.486
	SRR6706288	Light intensity 20%	54.457
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	52.701
	CNS0095593	Slightly white alabastrum(diploid) 2	75.709
	CNS0095594	Slightly white alabastrum(diploid) 3	67.462
	CNS0095595	Whole white alabastrum(diploid) 2	62.936
	CNS0095596	Whole white alabastrum(diploid) 3	62.070
	CNS0095597	Whole white alabastrum(diploid) 4	65.114
	CNS0095598	Silvery flower (diploied) 1	35.015
	CNS0095599	Silvery flower (diploied) 2	36.888
	CNS0095600	Silvery flower (diploied) 3	32.355
	CNS0095601	Golden flower (diploid) 1	43.363
	CNS0095602	Golden flower (diploid) 2	31.314
	CNS0095603	Golden flower (diploid) 3	35.258
	CNS0095604	Slightly white alabastrum(tetraploid) 1	61.341
	CNS0095605	Slightly white alabastrum(tetraploid) 2	64.164
	CNS0095606	Slightly white alabastrum(tetraploid) 3	56.858
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.177
	CNS0095608	Whole white alabastrum(tetraploid) 2	49.878
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.135
	CNS0095610	Silvery flower (diploied) 1	30.229
	CNS0095611	Silvery flower (diploied) 2	34.345
	CNS0095612	Silvery flower (diploied) 3	22.916
	CNS0095613	Golden flower (tetraploid) 1	20.498
	CNS0095614	Golden flower (tetraploid) 2	25.003
	CNS0095615	Golden flower (tetraploid) 3	14.337
CRA001975	CRR073297	Stem 1	44.610
	CRR073298	Stem 2	47.587
	CRR073299	Stem 3	57.889
	CRR073300	Leaf 1	47.071
	CRR073301	Leaf 2	46.570
	CRR073302	Leaf 3	73.699
	CRR073303	Juvenile bud 1	52.282
	CRR073304	Juvenile bud 2	45.812
	CRR073305	Juvenile bud 3	39.655
	CRR073306	Third green 1	9.320
	CRR073307	Third green 2	16.276
	CRR073308	Third green 3	12.981
	CRR073309	Second white 1	14.100
	CRR073310	Second white 2	12.648
	CRR073311	Second white 3	8.273
	CRR073312	Silver flowering 1	6.514
	CRR073313	Silver flowering 2	10.195
	CRR073314	Silver flowering 3	3.749
	CRR073315	Gold flowering 1	25.066
	CRR073316	Gold flowering 2	28.312
	CRR073317	Gold flowering 3	28.597
	CRR073318	Tawny withering 1	37.487
	CRR073319	Tawny withering 2	26.177
	CRR073320	Tawny withering 3	22.847