Gene detail

Detail information of GWHGAAZE025251

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAW66658.1	3.1236E-165	geranyl diphosphate synthase [Picrorhiza kurrooa]
COG	YP_007133900.1	1E-110	Farnesyltranstransferase
Swissprot	tr\|Q42698\|GGPPS_CATRO	3E-160	Geranylgeranyl pyrophosphate synthase, chloroplastic (Precursor)
trEMBL	tr\|Q5G1J1\|Q5G1J1_9LAMI	1E-165	Geranyl diphosphate synthase {ECO:0000313\|EMBL:AAW66658.1}
TAIR10	AT4G36810.1	2E-122	geranylgeranyl pyrophosphate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	58165196	58167517	+
GWHAAZE00000007	mRNA	58165196	58167517	+
GWHAAZE00000007	exon	58165196	58165729	+
GWHAAZE00000007	exon	58166936	58167517	+
GWHAAZE00000007	CDS	58165196	58165729	+
GWHAAZE00000007	CDS	58166936	58167517	+

Transcript Sequence
>GWHTAAZE025285 ATGATGAGTATTAATCTCAGCAAATCATGGGTTGAAATGAATTCCATGTATGCAATCCCAAACAAATCCAATTCTACTACTCCTAAATTCCTCCTCCAATCTTTCAACAGCAACAAACCCTTATCTCTCTTAAAATTCTACCACTCTTCTCTCTCTATCTCCTCAGCAGCTCTAACCAAAGAGCAAATCCAATATCCACAAGAGAAAAACCGAAACCATGACACCCAGCTGTTCGATTTCACGTCCTACATGTTCCAAAAGGTGAATTCAGTTAACCAGGCATTAAACGCCACCATTTCTGTCCGGAACCCTATAAAGCTCCACGAGTCCATGCGGTACACTCTCTTAGCGGGCGGAAAGCGCATCCGCCCCATGTATTGCATCGCCGCCTGTGAACTCGTCGGTGGCAATGAGTCCGTAGCAATGCCTGCAGCATGCGCCGTGGAGATGATCAACACCCTGTCCGTTATGCTCGACGACCTCCCCTGCATAGACAACGACGACCTCCGGCGAGGCAAGCCCGCCAACCACAAGGTCTTCGGCGAGGACATCACAGTTCTCGCCGGCAACGCCCTCCTCGCTTTCTCGTTCCATCACATCGCCACCTCGAGCACAGGCGTTTCCTCTGGCAGAATCGTCCGGGTAATTCTCGAGCTAGCCAAATGCATCGGAGCGGAGGGACTATTTGGCGGGCAAATACTCGATCTTTGCTCCGAGGGAATGGCCGATGTCAGTCTAGAACACCTTGAATTCATTCACGTCCTCAAAAGCGCGGCATTGATCGAGGCATCTGTAGTAGTTGGTGCAATTTTGGGAGGGGGATCAGATGAAGAGATCGAACAACTGAGGAAGTTCGCGAGATGTATTGGATTGTCATTCCAAGTTGTTGATGATATTTTAGATGTGACAAAATCGTCTAAAGAATTGGGGAAAACTGCCGGAAAAGATGTCGTCGCCAATAAAACGACTTACCCTAAATTGATCGGAATAGAGAAATCGAGAGAATTTGTATATAAATTGAAGGAGGAGGCTGAAGATCATCTTTCTGGGTTTGATTCAAGGAAAGTTGCACCATTAATTGCTTTGGCTAATTACCTTGTTAGACTAATGGATTGA

Network for GWHGAAZE025251

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00348.18	polyprenyl_synt	107	335	2.50E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13789	GGPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0008299	biological_process	isoprenoid biosynthetic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.002
	SRR3591706	second leaf	1.027
	SRR3591707	mature leaf	0.963
	SRR3591708	Shoot apex	2.647
	SRR3591709	Stem	5.469
	SRR3591710	White floral bud	8.643
	SRR3591711	White flower	1.945
	SRR3591712	Green floral bud	6.397
	SRR3591713	Yellow flower	1.496
SRP173429	SRR8316895	Juvenile bud stage	1.473
	SRR8316896	Juvenile bud stage	1.978
	SRR8316897	Juvenile bud stage	1.041
	SRR8316894	Third green stage	0.537
	SRR8316900	Third green stage	2.671
	SRR8316901	Third green stage	2.496
	SRR8316898	Complete white stage	1.027
	SRR8316899	Complete white stage	2.760
	SRR8316903	Complete white stage	0.897
	SRR8316902	Silver flowering stage	0.386
	SRR8316904	Silver flowering stage	0.426
	SRR8316905	Silver flowering stage	0.459
	SRR8316906	Gold flowering stage	0.631
	SRR8316907	Gold flowering stage	0.465
	SRR8316908	Gold flowering stage	0.521
SRP132670	SRR6706286	Control	3.702
	SRR6706287	Light intensity 50%	3.527
	SRR6706288	Light intensity 20%	2.821
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.770
	CNS0095593	Slightly white alabastrum(diploid) 2	2.726
	CNS0095594	Slightly white alabastrum(diploid) 3	3.501
	CNS0095595	Whole white alabastrum(diploid) 2	5.542
	CNS0095596	Whole white alabastrum(diploid) 3	6.527
	CNS0095597	Whole white alabastrum(diploid) 4	9.988
	CNS0095598	Silvery flower (diploied) 1	6.634
	CNS0095599	Silvery flower (diploied) 2	4.683
	CNS0095600	Silvery flower (diploied) 3	1.921
	CNS0095601	Golden flower (diploid) 1	4.002
	CNS0095602	Golden flower (diploid) 2	2.211
	CNS0095603	Golden flower (diploid) 3	1.725
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.894
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.368
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.767
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.443
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.784
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.948
	CNS0095610	Silvery flower (diploied) 1	1.516
	CNS0095611	Silvery flower (diploied) 2	2.871
	CNS0095612	Silvery flower (diploied) 3	2.843
	CNS0095613	Golden flower (tetraploid) 1	2.162
	CNS0095614	Golden flower (tetraploid) 2	2.554
	CNS0095615	Golden flower (tetraploid) 3	1.217
CRA001975	CRR073297	Stem 1	1.104
	CRR073298	Stem 2	1.056
	CRR073299	Stem 3	0.627
	CRR073300	Leaf 1	3.411
	CRR073301	Leaf 2	1.826
	CRR073302	Leaf 3	0.661
	CRR073303	Juvenile bud 1	2.605
	CRR073304	Juvenile bud 2	1.311
	CRR073305	Juvenile bud 3	0.816
	CRR073306	Third green 1	0.764
	CRR073307	Third green 2	0.509
	CRR073308	Third green 3	0.343
	CRR073309	Second white 1	0.387
	CRR073310	Second white 2	0.081
	CRR073311	Second white 3	0.237
	CRR073312	Silver flowering 1	0.136
	CRR073313	Silver flowering 2	0.133
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.360
	CRR073316	Gold flowering 2	0.369
	CRR073317	Gold flowering 3	0.710
	CRR073318	Tawny withering 1	1.948
	CRR073319	Tawny withering 2	1.907
	CRR073320	Tawny withering 3	0.424