Gene detail

Detail information of GWHGAAZE025259

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG24223.1	1.22906E-67	NAD-dependent ADP-ribosyltransferase sirtuin-4 [Gossypium arboreum]
COG	YP_005886317.1	5E-25	silent information regulator protein Sir2
Swissprot	tr\|Q94AQ6\|SIR4_ARATH	5E-62	NAD-dependent protein deacetylase SRT2 {ECO:0000255\|HAMAP-Rule:MF_03161} (Precursor)
trEMBL	tr\|A0A022Q0C8\|A0A022Q0C8_ERYGU	1E-67	NAD-dependent protein deacetylase {ECO:0000256\|HAMAP-Rule:MF_03161}
TAIR10	AT5G09230.7	1E-55	sirtuin 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	58331723	58343640	+
GWHAAZE00000007	mRNA	58331723	58343640	+
GWHAAZE00000007	exon	58331723	58331732	+
GWHAAZE00000007	exon	58331819	58332020	+
GWHAAZE00000007	exon	58332124	58332189	+
GWHAAZE00000007	exon	58333181	58333226	+
GWHAAZE00000007	exon	58333342	58333387	+
GWHAAZE00000007	exon	58334474	58334609	+
GWHAAZE00000007	exon	58335748	58336467	+
GWHAAZE00000007	exon	58337225	58337365	+
GWHAAZE00000007	exon	58337436	58337565	+
GWHAAZE00000007	exon	58338112	58338345	+
GWHAAZE00000007	exon	58340813	58340974	+
GWHAAZE00000007	exon	58342130	58342236	+
GWHAAZE00000007	exon	58343146	58343245	+
GWHAAZE00000007	exon	58343590	58343640	+
GWHAAZE00000007	CDS	58331723	58331732	+
GWHAAZE00000007	CDS	58331819	58332020	+
GWHAAZE00000007	CDS	58332124	58332189	+
GWHAAZE00000007	CDS	58333181	58333226	+
GWHAAZE00000007	CDS	58333342	58333387	+
GWHAAZE00000007	CDS	58334474	58334609	+
GWHAAZE00000007	CDS	58335748	58336467	+
GWHAAZE00000007	CDS	58337225	58337365	+
GWHAAZE00000007	CDS	58337436	58337565	+
GWHAAZE00000007	CDS	58338112	58338345	+
GWHAAZE00000007	CDS	58340813	58340974	+
GWHAAZE00000007	CDS	58342130	58342236	+
GWHAAZE00000007	CDS	58343146	58343245	+
GWHAAZE00000007	CDS	58343590	58343640	+

Transcript Sequence
>GWHTAAZE025293 ATGATTGCAGGCAGAGCAAAAAGGGCCGTATTTTGCCTGGGATCGGTGAGGTGTGTACAAACAATATGCAGAATCTCGGTTCCTGGAGCTTCATCACTGGAACATAAAGAAAATACGCCTTCAAACTTTTTAAGGGACAAGAAGATGGTTCCCGATTCAGATCCTCCAAGCACCAAAGATGTTGACCATTTGTATCAGTTCTTTGATCAAAGTACCAAACTTGTTGTTTTGACCGGTGCTGGGATAAGCACAGAGTGTGGAATTCCTGATTATAGAAGCCCAAACGGAGCTTATAGTACTGGTTTCAAGCCAATTACCCATCAGGATATTCAGTTTTGTTTTGTTTCTGCTAAAACAACTAAGCTATGCAGGCTCCTTAAGAACCACCTTATTAGTCTGATGTGGGAGGGCCTAGATTGGAACCTGAATGGGTTCTATCAGTTTCTTTTAGGATTGTTGGGGGTTGTTGGAGCCAGATCTTATGGGAGTGTCTTGGGAGTGGTATGTGACGATTTGTGGGATGATGATGGTGATGGAGAAACTTGGATTTCTGACTCCTATGCCTCAGAAATTGATCCTTTAAATGAGAATGAGTTACACTCTCATCATTTACATGTAGATCATGCATTAAATTGGGGCAATATGGCAGAAGACGAGCCTCTCCAGTCTTGGGAGGCAATGGCAGATGATCAATATGCTGCAGCCATTGCCAAAAATCAGAATAACAATGAAGAGTGCATTCAACTTCATCAAGATGATAACTCTTCAATCCTAACCAGAACTTTCCTCCTTTGGGTGAAAGCAGTCCTGTTACCAAACAGCCCTCTCAGAGCATTATCAATAAAACAACAAAGGGTTCTGAGTATGTGGCCCTCTCCTCTCAAGACCAGAGCTCAAAGGCAAAAGAAAGGCCAGCCTCTTTCTCTTTCCAAACAGCTAAAGGCCAAGAAAGCTGTCAACAGAGAATTAAAAGCTTATTCTAGAAAATCCAAATCCACAGCTCAACCTCAAACTTCTGATCCTGATGCTTTTCAATGGCAACTTTATGAAAAAGATAAAAAGAAGAGGGAAGATGAAGCAGCAGCAGCTAAATCTAATGATGAACAACACCAATGGAAGGTGTGTGTTTATGCTAAGAGCCCCATTTTCACAGCTGATGCTTCAAGGACAATTTCCGGTCCTTTGTATGCAGAAAACATTACAATTGCCCATGAAGAAAAAGCCAAGGCCCGTAGGCGGTATTGGGCAAGAAGCTATGCTGGGTGGAGACGGTTCACTGCTGCACAACCCAGTGCTGCTCATACTGCTTTAGCATCTCTTGAGAAAGCCAGCCGGATAAATTTTATGATTACACAAAACGTAGACAGGCTTCATCATCGTGCTGGTAGTAACCCACTTGAATTACATGGGACTGTATATACCGTTGGTTGCGTAGACTGTGATTTTTCTTTTCCAAGAGATTTATTTCAAGACCAAGTGAAGGCCCTTAATCCAAAGCTGTTTGGTTGTGGAGCTGTTGTTCAGAACAGAGAAGTTGCTGTATATATCACCAGAAATGACAGAGCACCCGATCTAGTGTTGCTTCAACTACTGATAAGGCCCTCAAATTCGTTATTTGACAACTTCCATTTGAAAGAATATGAGGGTTACAAACTTGTTATGGAATGCAAGGAAAGGGGGGACACGATTTTTGATGTTACTAACTATAGAGATAGGGAAAAATTAGAACAGTGGTCAGCTGCAATTGAAAGTCTGGACTATGATAGCCAGTCAGACAAGAGCTTTGGAATGAAGCAAAGGCCTGATGGGGATATTGAAATTGACGAGAAATTCTGGGAAGAAGATTTCCTTATACCCACTTGTCCCAAATGCAGTGGAGTACTCAAACCTGATGTCGTCTTTTTTGGTGATAATGTTCCCAAAGATAGAGCCGATACAGCGATGGAAGCAGCAAAGGGATGTGATGCTTTCCTCGTACTTGGTTCATCTCTTATGACAATAGCCGCTCAGGAGGCAGGTGCATCTACTGCAGTTGTAAATGTAGGCGAGACACGGGCTGATGAACTTGTGGCGCTGAAAATAAATGCTCGACTAGGAGAGATACTACCAAGATTGCTCAATGTTGGATCCCTCAGCGTTCCTGCTATCTAG

Network for GWHGAAZE025259

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0274	GO:0070403 NAD+ binding GOslim:molecular_function map04112 Cell cycle - Caulobacter map00760 Nicotinate and nicotinamide metabolism

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02146.18	SIR2	79	100	3.10E-05
PF02146.18	SIR2	408	665	7.10E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11414	SIRT4, SIR2L4	Metabolic pathways	map01100
K11414	SIRT4, SIR2L4	Nicotinate and nicotinamide metabolism	map00760

Gene Ontology

GO term	Ontology	Name
GO:0070403	molecular_function	NAD+ binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.967
	SRR3591706	second leaf	8.992
	SRR3591707	mature leaf	12.333
	SRR3591708	Shoot apex	6.134
	SRR3591709	Stem	7.334
	SRR3591710	White floral bud	9.258
	SRR3591711	White flower	10.167
	SRR3591712	Green floral bud	7.205
	SRR3591713	Yellow flower	8.407
SRP173429	SRR8316895	Juvenile bud stage	2.893
	SRR8316896	Juvenile bud stage	5.384
	SRR8316897	Juvenile bud stage	2.440
	SRR8316894	Third green stage	2.386
	SRR8316900	Third green stage	5.630
	SRR8316901	Third green stage	7.458
	SRR8316898	Complete white stage	3.139
	SRR8316899	Complete white stage	7.419
	SRR8316903	Complete white stage	5.688
	SRR8316902	Silver flowering stage	2.506
	SRR8316904	Silver flowering stage	3.425
	SRR8316905	Silver flowering stage	1.599
	SRR8316906	Gold flowering stage	6.122
	SRR8316907	Gold flowering stage	5.842
	SRR8316908	Gold flowering stage	6.506
SRP132670	SRR6706286	Control	4.849
	SRR6706287	Light intensity 50%	4.892
	SRR6706288	Light intensity 20%	5.117
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.005
	CNS0095593	Slightly white alabastrum(diploid) 2	3.046
	CNS0095594	Slightly white alabastrum(diploid) 3	3.864
	CNS0095595	Whole white alabastrum(diploid) 2	3.840
	CNS0095596	Whole white alabastrum(diploid) 3	2.772
	CNS0095597	Whole white alabastrum(diploid) 4	3.474
	CNS0095598	Silvery flower (diploied) 1	4.019
	CNS0095599	Silvery flower (diploied) 2	4.521
	CNS0095600	Silvery flower (diploied) 3	5.146
	CNS0095601	Golden flower (diploid) 1	3.924
	CNS0095602	Golden flower (diploid) 2	4.752
	CNS0095603	Golden flower (diploid) 3	5.428
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.700
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.700
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.839
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.946
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.115
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.292
	CNS0095610	Silvery flower (diploied) 1	18.716
	CNS0095611	Silvery flower (diploied) 2	17.918
	CNS0095612	Silvery flower (diploied) 3	16.356
	CNS0095613	Golden flower (tetraploid) 1	10.313
	CNS0095614	Golden flower (tetraploid) 2	13.293
	CNS0095615	Golden flower (tetraploid) 3	9.905
CRA001975	CRR073297	Stem 1	4.076
	CRR073298	Stem 2	3.412
	CRR073299	Stem 3	2.714
	CRR073300	Leaf 1	3.330
	CRR073301	Leaf 2	3.218
	CRR073302	Leaf 3	1.966
	CRR073303	Juvenile bud 1	3.132
	CRR073304	Juvenile bud 2	3.589
	CRR073305	Juvenile bud 3	2.450
	CRR073306	Third green 1	0.389
	CRR073307	Third green 2	0.656
	CRR073308	Third green 3	0.701
	CRR073309	Second white 1	2.772
	CRR073310	Second white 2	2.839
	CRR073311	Second white 3	2.264
	CRR073312	Silver flowering 1	1.820
	CRR073313	Silver flowering 2	2.420
	CRR073314	Silver flowering 3	1.410
	CRR073315	Gold flowering 1	6.182
	CRR073316	Gold flowering 2	6.020
	CRR073317	Gold flowering 3	3.514
	CRR073318	Tawny withering 1	2.105
	CRR073319	Tawny withering 2	3.178
	CRR073320	Tawny withering 3	2.675