Gene detail

Detail information of GWHGAAZE025268

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011091887.1	1.22607E-98	PREDICTED: ethylene-responsive transcription factor WRI1-like [Sesamum indicum]
Swissprot	tr\|Q6X5Y6\|WRI1_ARATH	6E-79	Ethylene-responsive transcription factor WRI1
trEMBL	tr\|M1CML9\|M1CML9_SOLTU	5E-98	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400070735}
TAIR10	AT3G54320.3	3E-60	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	58585867	58594779	-
GWHAAZE00000007	mRNA	58585867	58594779	-
GWHAAZE00000007	exon	58585867	58586387	-
GWHAAZE00000007	exon	58588447	58588523	-
GWHAAZE00000007	exon	58589282	58589406	-
GWHAAZE00000007	exon	58594265	58594379	-
GWHAAZE00000007	exon	58594571	58594779	-
GWHAAZE00000007	CDS	58594571	58594779	-
GWHAAZE00000007	CDS	58594265	58594379	-
GWHAAZE00000007	CDS	58589282	58589406	-
GWHAAZE00000007	CDS	58588447	58588523	-
GWHAAZE00000007	CDS	58585867	58586387	-

Transcript Sequence
>GWHTAAZE025302 ATGAAGAGGTCACCTCCTTGTTCCTCTGGTTCTTCATCCTCATGCATTGATTCAATCCACCCTAATCAATGCGACACTAAACCGAAATCCAATCGGTCTAGAGCTAAGAAAAAGTGTGATCAGAGCAATGCTAATAGTAACAGCACCCCGGCCTCTGCCCCAGCTGCGGCCACGGGCAAGAGGAGCTCCATTTACAGGGGCGTCACCAGGCATAGATGGACGGGAAGGTATGAAGCACACCTGTGGGACAAGACTACTTGGAATGCTGTTCAAAACAAAAAAGGGCGACAGAGTAATGAATTTCTCTCTGCCTTTTTTAAAGAGATCGAAACGTACCAAAGTGACCTTGAGAAAATGGAGAAAGTATCGAAAGAAGAGTATTTAGCTTCTCTACGACGAATGAGCAGCGGATTTTCTAGAGGTGTTTCTAAGTATCGAGGGGTTGCAAGGCACCATCACAACGGTCGATGGGAGGCACGGATTGGGAGAGTATTTGGAAACAAGTATCTCTACTTGGGTACCTACAGCACACAAGAAGAAGCAGCAGCGGCATATGACTTGGCAGCTATAGAGTACAGAGGGCCTAATGCAGTAACCAACTTCGACATCAGTGTCTACGCAGACCGCTTGAAAAATGTGCTCCCAAACTGCCAAACAGAAAACCAGAACCACCACACTGAATCCGAAGGCAATGAGCAAGAAGTAGATCACCATTATCAACAAGAACAAGTGGCAGAGCCAAATGTACAACACCTCGAGTTCTCTTCTTCAATCGACTCGCACATGATGGACGAGCAAGAGCAGCATTACCCTTGGAGCCAGCTGTGTTTGGATACAAGTGGTTTTGATCCGCTCCCAGTTCCTGATATCCCCCTCGAGATACAAGGTGAGCTGCTGGACTTGTTTGGCAGCACGGGTTTTGAGGACAACATTGACTTCATATTTGATGACAATTATGAGATCAACCAGATCAAGGGTGGTGGCGGTGGCGGTGGCAGTGGCGATATTGTAGCAGCTATGGATGGTAAAGGGCAGCACAATACTGGA

Network for GWHGAAZE025268

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	143	194	2.80E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.466
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.136
	SRR3591710	White floral bud	0.061
	SRR3591711	White flower	0.405
	SRR3591712	Green floral bud	0.299
	SRR3591713	Yellow flower	0.094
SRP173429	SRR8316895	Juvenile bud stage	1.202
	SRR8316896	Juvenile bud stage	0.694
	SRR8316897	Juvenile bud stage	0.096
	SRR8316894	Third green stage	0.210
	SRR8316900	Third green stage	0.186
	SRR8316901	Third green stage	0.310
	SRR8316898	Complete white stage	0.864
	SRR8316899	Complete white stage	0.090
	SRR8316903	Complete white stage	0.415
	SRR8316902	Silver flowering stage	1.136
	SRR8316904	Silver flowering stage	0.167
	SRR8316905	Silver flowering stage	0.073
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.147
SRP132670	SRR6706286	Control	0.104
	SRR6706287	Light intensity 50%	0.129
	SRR6706288	Light intensity 20%	0.160
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.568
	CNS0095593	Slightly white alabastrum(diploid) 2	0.055
	CNS0095594	Slightly white alabastrum(diploid) 3	1.928
	CNS0095595	Whole white alabastrum(diploid) 2	0.331
	CNS0095596	Whole white alabastrum(diploid) 3	0.188
	CNS0095597	Whole white alabastrum(diploid) 4	0.167
	CNS0095598	Silvery flower (diploied) 1	0.135
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.002
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.143
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.278
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.015
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.146
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.085
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.049
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.404
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.110
	CNS0095615	Golden flower (tetraploid) 3	0.349
CRA001975	CRR073297	Stem 1	1.612
	CRR073298	Stem 2	0.980
	CRR073299	Stem 3	0.737
	CRR073300	Leaf 1	0.076
	CRR073301	Leaf 2	0.366
	CRR073302	Leaf 3	0.002
	CRR073303	Juvenile bud 1	0.311
	CRR073304	Juvenile bud 2	0.036
	CRR073305	Juvenile bud 3	0.097
	CRR073306	Third green 1	0.113
	CRR073307	Third green 2	0.372
	CRR073308	Third green 3	0.053
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.199
	CRR073313	Silver flowering 2	0.064
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.067
	CRR073316	Gold flowering 2	0.381
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	2.106
	CRR073319	Tawny withering 2	0.977
	CRR073320	Tawny withering 3	6.247