Gene detail

Detail information of GWHGAAZE025312

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010660896.1	0	PREDICTED: shaggy-related protein kinase epsilon isoform X1 [Vitis vinifera]
COG	YP_008149401.1	9E-25	hypothetical protein SCE1572_14835
Swissprot	tr\|Q8VZD5\|KSG5_ARATH	0	Shaggy-related protein kinase epsilon
trEMBL	tr\|D7TWM5\|D7TWM5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34900.3}
TAIR10	AT5G14640.1	0	shaggy-like kinase 13

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	59425473	59431889	+
GWHAAZE00000007	mRNA	59425473	59431889	+
GWHAAZE00000007	exon	59425473	59425545	+
GWHAAZE00000007	exon	59425660	59425703	+
GWHAAZE00000007	exon	59426201	59426332	+
GWHAAZE00000007	exon	59426447	59426539	+
GWHAAZE00000007	exon	59427192	59427251	+
GWHAAZE00000007	exon	59427624	59427896	+
GWHAAZE00000007	exon	59428973	59429044	+
GWHAAZE00000007	exon	59429430	59429486	+
GWHAAZE00000007	exon	59429627	59429767	+
GWHAAZE00000007	exon	59429865	59429915	+
GWHAAZE00000007	exon	59430197	59430292	+
GWHAAZE00000007	exon	59430402	59430485	+
GWHAAZE00000007	exon	59431541	59431643	+
GWHAAZE00000007	exon	59431807	59431889	+
GWHAAZE00000007	CDS	59425473	59425545	+
GWHAAZE00000007	CDS	59425660	59425703	+
GWHAAZE00000007	CDS	59426201	59426332	+
GWHAAZE00000007	CDS	59426447	59426539	+
GWHAAZE00000007	CDS	59427192	59427251	+
GWHAAZE00000007	CDS	59427624	59427896	+
GWHAAZE00000007	CDS	59428973	59429044	+
GWHAAZE00000007	CDS	59429430	59429486	+
GWHAAZE00000007	CDS	59429627	59429767	+
GWHAAZE00000007	CDS	59429865	59429915	+
GWHAAZE00000007	CDS	59430197	59430292	+
GWHAAZE00000007	CDS	59430402	59430485	+
GWHAAZE00000007	CDS	59431541	59431643	+
GWHAAZE00000007	CDS	59431807	59431889	+

Transcript Sequence
>GWHTAAZE025346 ATGAGAGAGAAGAGATTCTTCACTCAGACTCAGGTAGTCAAAGCTGATAATTTAAGAAAGGTCTCTGAAACTTCTAGGTTAAGGAGTTTGCAAAATGTGAGTGCTTCAATATTGCAGTTGATCACCAAGATGTCTTCAGCTGGCACCGCACCTTCAGCAATGAGAAAACCCAATGGCAATGCAATGTTTGTTGACAAACTCCCAGAGGAAATTAATGAAATGAAAATCAGAGATGATAAAGCAGAGAAGGAAATGGAGGCAACGGTGGTGGATGGAAATGGAACTGAAACAGGCCACATCATTGTAACAACTATTGGTGGTAGAAATGGTCAGCCCAAACAGACCATAAGTTATATGGCAGAGCGTATTGTTGGACAGGGTTCGTTTGGGATTGTTTTTCAGGCAAAATGCTTAGAAACTGGTGAAACTGTTGCAATAAAAAAGGTCTTGCAGGATAAGAGATATAAGAATCGGGAATTGCAAACAATGCGTCTTCTTGATCATCCAAATGTTGTTTCACTCAAACACTGCTTCTTTTCGACAACGGACAAAGACGAGCTTTATCTCAATTTGGTCCTTGAGTATGTACCAGAGACGGTCTACCGAGTGGCAAGACACTACAGCAAGGCAAATCAACGAATGCCTATGATATATGTCAAACTTTACACATATCAGATTTTTAGAGCTTTAGCATATATTCATGGGATAGGGGTCTGCCACAGGGACATTAAGCCTCAAAATCTACTGGTTAATCCCCATACCCATCAGCTCAAACTCTGTGATTTTGGCAGCGCGAAAGCTCTGGTCAAAGGAGAGCCAAATATATCATATATTTGTTCTCGATATTATCGTGCACCTGAACTCATATTCGGGGCAACTGAATACACAACTGCAATTGACATTTGGTCTGTGGGTTGCGTTCTTGCCGAATTGCTTCTTGGACAGCCTCTATTTCCGGGTGAGAGTGGAGTTGATCAGCTTGTTGAAATAATCAAGGTTCTTGGGACTCCGACTCGTGAAGAAATCAAATGCATGAATCCCAACTATACAGAGTTTAAATTCCCACAAATCAAGGCTCACCCCTGGCACAAAATTTTTCACAAGCGAATGCCCCCTGAAGCTGTAGATCTTGTCTCTAGACTTCTTCAATACTCTCCGAATTTGAGGTGTACTGCTTTGGAGGCCTGTATCCACCCCTTCTTTGAAGAACTCCGCGATCCTAACAATCATCTCCCCAATGGTCGCGCCTTGCCGCCCCTCTTCAACTTTAAGCCTCAAGAGCTGAAAGGAGCATCTCTAGAACTGCTGGTGAAACTCATACCGGAGCATGCTCGGAAGCAATGTCCCTTCCTCACTTTCTAG

Network for GWHGAAZE025312

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	118	401	5.70E-66

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_GSK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	74.185
	SRR3591706	second leaf	58.478
	SRR3591707	mature leaf	82.556
	SRR3591708	Shoot apex	101.098
	SRR3591709	Stem	114.054
	SRR3591710	White floral bud	90.306
	SRR3591711	White flower	90.571
	SRR3591712	Green floral bud	107.893
	SRR3591713	Yellow flower	59.218
SRP173429	SRR8316895	Juvenile bud stage	80.966
	SRR8316896	Juvenile bud stage	105.279
	SRR8316897	Juvenile bud stage	49.298
	SRR8316894	Third green stage	44.498
	SRR8316900	Third green stage	103.616
	SRR8316901	Third green stage	101.505
	SRR8316898	Complete white stage	38.287
	SRR8316899	Complete white stage	184.897
	SRR8316903	Complete white stage	57.864
	SRR8316902	Silver flowering stage	26.301
	SRR8316904	Silver flowering stage	31.797
	SRR8316905	Silver flowering stage	15.172
	SRR8316906	Gold flowering stage	60.697
	SRR8316907	Gold flowering stage	48.221
	SRR8316908	Gold flowering stage	57.698
SRP132670	SRR6706286	Control	146.505
	SRR6706287	Light intensity 50%	136.098
	SRR6706288	Light intensity 20%	136.325
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	92.127
	CNS0095593	Slightly white alabastrum(diploid) 2	86.205
	CNS0095594	Slightly white alabastrum(diploid) 3	78.404
	CNS0095595	Whole white alabastrum(diploid) 2	71.597
	CNS0095596	Whole white alabastrum(diploid) 3	47.193
	CNS0095597	Whole white alabastrum(diploid) 4	54.335
	CNS0095598	Silvery flower (diploied) 1	73.511
	CNS0095599	Silvery flower (diploied) 2	75.551
	CNS0095600	Silvery flower (diploied) 3	76.153
	CNS0095601	Golden flower (diploid) 1	74.203
	CNS0095602	Golden flower (diploid) 2	80.965
	CNS0095603	Golden flower (diploid) 3	78.417
	CNS0095604	Slightly white alabastrum(tetraploid) 1	90.045
	CNS0095605	Slightly white alabastrum(tetraploid) 2	71.923
	CNS0095606	Slightly white alabastrum(tetraploid) 3	158.262
	CNS0095607	Whole white alabastrum(tetraploid) 1	68.132
	CNS0095608	Whole white alabastrum(tetraploid) 2	50.490
	CNS0095609	Whole white alabastrum(tetraploid) 3	89.762
	CNS0095610	Silvery flower (diploied) 1	62.742
	CNS0095611	Silvery flower (diploied) 2	73.520
	CNS0095612	Silvery flower (diploied) 3	41.811
	CNS0095613	Golden flower (tetraploid) 1	43.811
	CNS0095614	Golden flower (tetraploid) 2	52.522
	CNS0095615	Golden flower (tetraploid) 3	25.905
CRA001975	CRR073297	Stem 1	116.862
	CRR073298	Stem 2	102.449
	CRR073299	Stem 3	95.403
	CRR073300	Leaf 1	102.388
	CRR073301	Leaf 2	100.010
	CRR073302	Leaf 3	84.558
	CRR073303	Juvenile bud 1	88.141
	CRR073304	Juvenile bud 2	52.899
	CRR073305	Juvenile bud 3	100.426
	CRR073306	Third green 1	15.154
	CRR073307	Third green 2	13.891
	CRR073308	Third green 3	20.198
	CRR073309	Second white 1	15.961
	CRR073310	Second white 2	13.574
	CRR073311	Second white 3	12.873
	CRR073312	Silver flowering 1	8.325
	CRR073313	Silver flowering 2	8.730
	CRR073314	Silver flowering 3	10.490
	CRR073315	Gold flowering 1	54.019
	CRR073316	Gold flowering 2	77.685
	CRR073317	Gold flowering 3	49.776
	CRR073318	Tawny withering 1	97.468
	CRR073319	Tawny withering 2	98.161
	CRR073320	Tawny withering 3	97.471