Gene detail

Detail information of GWHGAAZE025326

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGB05602.1	0	sn-glycerol-3-phosphate acyltransferase [Camellia oleifera]
Swissprot	tr\|Q9XFW4\|LPAT2_BRANA	0	1-acyl-sn-glycerol-3-phosphate acyltransferase 2
trEMBL	tr\|L0HQD1\|L0HQD1_9ERIC	0	sn-glycerol-3-phosphate acyltransferase {ECO:0000313\|EMBL:AGB05602.1}
TAIR10	AT3G57650.1	2E-153	lysophosphatidyl acyltransferase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	59654634	59660519	+
GWHAAZE00000007	mRNA	59654634	59660519	+
GWHAAZE00000007	exon	59654634	59654714	+
GWHAAZE00000007	exon	59655443	59655565	+
GWHAAZE00000007	exon	59655781	59655820	+
GWHAAZE00000007	exon	59655922	59655995	+
GWHAAZE00000007	exon	59656280	59656339	+
GWHAAZE00000007	exon	59656777	59656854	+
GWHAAZE00000007	exon	59656977	59657135	+
GWHAAZE00000007	exon	59657718	59657843	+
GWHAAZE00000007	exon	59659300	59659392	+
GWHAAZE00000007	exon	59660097	59660183	+
GWHAAZE00000007	exon	59660277	59660519	+
GWHAAZE00000007	CDS	59654634	59654714	+
GWHAAZE00000007	CDS	59655443	59655565	+
GWHAAZE00000007	CDS	59655781	59655820	+
GWHAAZE00000007	CDS	59655922	59655995	+
GWHAAZE00000007	CDS	59656280	59656339	+
GWHAAZE00000007	CDS	59656777	59656854	+
GWHAAZE00000007	CDS	59656977	59657135	+
GWHAAZE00000007	CDS	59657718	59657843	+
GWHAAZE00000007	CDS	59659300	59659392	+
GWHAAZE00000007	CDS	59660097	59660183	+
GWHAAZE00000007	CDS	59660277	59660519	+

Transcript Sequence
>GWHTAAZE025360 ATGGCGATTGCAGCTGCAGCTGTGATTGTACCTATGGGCGTTTTCTTCTTTATCTCAGGTCTTGTTGTCAATTTCATTCAGGCAATCTGCTTTGTTCTTCTTCGGCCGTTTTCAAAGAGTACATACAGAAGGATTAACAGAGTGGTGGTTGAATTGTTGTGGCTGGAGTTCGTATGGCTCGTTGATTGGTGGGCAGGGCTCAAGATTCAGCTCTATATAGATTCAGAAACAGTCCAAATGATGGGTAAGGAACACGCACTTCTCATATGTAACCACCGAAGTGACATTGATTGGCTTGTTGGATGGGTTTTGGCTCAGCGATCAAGCTGCCTTGGTGGTACATTAGCTGTGATGAAGAAATCGTCGAAACTCCTTCCGGTTGTAGGTTGGTCAATGTGGTTTTCTGAGTATCTCTTTCTTGACAGGAATTGGGACAAGGATGAAAGTACGTTAGAGTCAGGTCTTAAACGCCTAAAGGATTTCCCTCAGCCCTTTTGGTTGGCACTTTTTGTTGAGGGAACTCGCTTTACACAGGCAAAGCTTTTAGCTGCTCAAGATTACGCATCTTCAAAAGGATTGCATGTTCCCAGGAATGTTCTAATTCCGCGAACTAAGGGTTTTGTTGCAGCAGTAAGTCATATGCGGTCTTTTGTTCCAGCCATTTATGATGTAACTGTTACTGTCCCCAAAGATTCGCCTGCACCTACTATGCTTAGACTCTTTAAGGGTCAACCTTCTGTGGTGCATGTCCACCTCAAGCGGCATTTGATGAAGGATTTGCCAGAAACTGATGATTCTGTTTCACAGTGGTGTAAAAACATATTTGTGGCGAAGGATAATTTATTGGACAGACATAAAACTGAAAACTCATTTGGTGATCAAAACGAACAAAACACCAGTCGGCCAGTAAAGTCTCTGGTGGTTGTAATCTCTTGGTCGTGTTTGCTTATTGTAAGCGCACTAAAATTCCTCCAGTGGTCTTCACTATTATCCTCGTGGAAAGGTTTCACATTTGCAGCCATTGGCTTGGCTATTGTTACCGTTTTTATGCAGATTTTGATTCAATTTTCTCAGTCAGAGCGTTCAACTCCGGCCAAGGGTGCTCCGCCAAAGCTCAAGAACGGGGGCGGGCCGCCAAGTACCCAAATTGATAAAAAGCAGTAA

Network for GWHGAAZE025326

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01553.22	Acyltransferase	80	227	1.80E-16
PF16076.6	Acyltransf_C	239	312	1.10E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13523	AGPAT3_4	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerolipid metabolism	map00561
		Glycerophospholipid metabolism	map00564
		Phospholipase D signaling pathway	map04072

Gene Ontology

GO term	Ontology	Name
GO:0016746	molecular_function	transferase activity, transferring acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.005
	SRR3591706	second leaf	10.971
	SRR3591707	mature leaf	8.728
	SRR3591708	Shoot apex	12.927
	SRR3591709	Stem	11.980
	SRR3591710	White floral bud	9.776
	SRR3591711	White flower	7.617
	SRR3591712	Green floral bud	12.772
	SRR3591713	Yellow flower	7.023
SRP173429	SRR8316895	Juvenile bud stage	9.585
	SRR8316896	Juvenile bud stage	13.387
	SRR8316897	Juvenile bud stage	9.036
	SRR8316894	Third green stage	4.583
	SRR8316900	Third green stage	17.420
	SRR8316901	Third green stage	15.025
	SRR8316898	Complete white stage	6.268
	SRR8316899	Complete white stage	19.499
	SRR8316903	Complete white stage	9.727
	SRR8316902	Silver flowering stage	4.140
	SRR8316904	Silver flowering stage	7.320
	SRR8316905	Silver flowering stage	3.557
	SRR8316906	Gold flowering stage	11.431
	SRR8316907	Gold flowering stage	8.501
	SRR8316908	Gold flowering stage	9.308
SRP132670	SRR6706286	Control	10.319
	SRR6706287	Light intensity 50%	11.240
	SRR6706288	Light intensity 20%	12.259
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.108
	CNS0095593	Slightly white alabastrum(diploid) 2	13.516
	CNS0095594	Slightly white alabastrum(diploid) 3	12.693
	CNS0095595	Whole white alabastrum(diploid) 2	10.890
	CNS0095596	Whole white alabastrum(diploid) 3	12.796
	CNS0095597	Whole white alabastrum(diploid) 4	12.301
	CNS0095598	Silvery flower (diploied) 1	8.098
	CNS0095599	Silvery flower (diploied) 2	8.705
	CNS0095600	Silvery flower (diploied) 3	12.432
	CNS0095601	Golden flower (diploid) 1	6.706
	CNS0095602	Golden flower (diploid) 2	10.934
	CNS0095603	Golden flower (diploid) 3	12.225
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.130
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.568
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.605
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.908
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.148
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.836
	CNS0095610	Silvery flower (diploied) 1	14.784
	CNS0095611	Silvery flower (diploied) 2	17.341
	CNS0095612	Silvery flower (diploied) 3	14.232
	CNS0095613	Golden flower (tetraploid) 1	8.802
	CNS0095614	Golden flower (tetraploid) 2	15.357
	CNS0095615	Golden flower (tetraploid) 3	5.458
CRA001975	CRR073297	Stem 1	14.358
	CRR073298	Stem 2	14.745
	CRR073299	Stem 3	10.570
	CRR073300	Leaf 1	23.434
	CRR073301	Leaf 2	16.212
	CRR073302	Leaf 3	15.563
	CRR073303	Juvenile bud 1	23.456
	CRR073304	Juvenile bud 2	19.320
	CRR073305	Juvenile bud 3	19.216
	CRR073306	Third green 1	10.143
	CRR073307	Third green 2	9.926
	CRR073308	Third green 3	10.622
	CRR073309	Second white 1	6.898
	CRR073310	Second white 2	7.020
	CRR073311	Second white 3	6.229
	CRR073312	Silver flowering 1	3.115
	CRR073313	Silver flowering 2	3.716
	CRR073314	Silver flowering 3	6.151
	CRR073315	Gold flowering 1	4.735
	CRR073316	Gold flowering 2	10.122
	CRR073317	Gold flowering 3	6.205
	CRR073318	Tawny withering 1	11.492
	CRR073319	Tawny withering 2	7.398
	CRR073320	Tawny withering 3	6.862